Variant report

Variant	rs9870979
Chromosome Location	chr3:81890928-81890929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13314900	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1404296	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1851922	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851924	0.83[EUR][1000 genomes]
rs1973802	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2316043	0.83[EUR][1000 genomes]
rs2680275	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2680276	0.85[EUR][1000 genomes]
rs28553548	0.85[EUR][1000 genomes]
rs28668209	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3772886	0.85[EUR][1000 genomes]
rs57555994	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59419728	0.90[EUR][1000 genomes]
rs62265681	0.92[EUR][1000 genomes]
rs62267115	0.86[EUR][1000 genomes]
rs62267150	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6548778	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6768673	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778413	0.83[EUR][1000 genomes]
rs6785740	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6791629	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6798822	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6804453	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6804613	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6804697	0.90[EUR][1000 genomes]
rs7611917	0.83[EUR][1000 genomes]
rs7633528	0.92[EUR][1000 genomes]
rs7634830	0.90[EUR][1000 genomes]
rs7635332	0.81[EUR][1000 genomes]
rs7644425	0.83[EUR][1000 genomes]
rs9812141	0.83[EUR][1000 genomes]
rs9812505	0.83[EUR][1000 genomes]
rs9813371	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9816203	0.92[EUR][1000 genomes]
rs9820490	0.85[EUR][1000 genomes]
rs9825400	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826933	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9827558	0.83[EUR][1000 genomes]
rs9831301	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9831360	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9833851	0.92[EUR][1000 genomes]
rs9835279	0.85[EUR][1000 genomes]
rs9838598	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851559	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9863322	0.86[EUR][1000 genomes]
rs9874754	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81886600-81891600	Enhancers	Dnd41	blood
2	chr3:81888600-81891400	Enhancers	Fetal Heart	heart
3	chr3:81889200-81894800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:81889400-81891400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:81889400-81895800	Weak transcription	Psoas Muscle	Psoas
6	chr3:81890200-81892000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:81890400-81891200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:81890400-81891400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:81890400-81891600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:81890800-81891400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:81890800-81891800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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