Variant report

Variant	rs9871815
Chromosome Location	chr3:144585786-144585787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12695787	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2889112	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4681630	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6789186	0.90[AMR][1000 genomes]
rs940067	0.90[AMR][1000 genomes]
rs9826226	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1005754	chr3:144529346-144984363	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv525344	chr3:144584373-144663231	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144583800-144587400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:144584600-144586600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:144584600-144586800	Enhancers	NHDF-Ad	bronchial
4	chr3:144584800-144585800	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:144584800-144586000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:144584800-144586000	Enhancers	Brain Substantia Nigra	brain
7	chr3:144584800-144586200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:144584800-144586400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:144584800-144588000	Enhancers	Adipose Nuclei	Adipose
10	chr3:144585000-144586000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:144585000-144586000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:144585000-144586200	Enhancers	Primary hematopoietic stem cells	blood
13	chr3:144585000-144586200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:144585000-144588200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:144585200-144586000	Enhancers	Colon Smooth Muscle	Colon
16	chr3:144585200-144586200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:144585400-144585800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:144585400-144587200	Enhancers	Ovary	ovary
19	chr3:144585600-144586400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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