Variant report

Variant	rs9874038
Chromosome Location	chr3:162680532-162680533
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10936322	0.82[EUR][1000 genomes]
rs11921809	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630065	0.88[ASN][1000 genomes]
rs12630082	0.88[ASN][1000 genomes]
rs12631981	0.80[ASN][1000 genomes]
rs12632042	0.82[ASN][1000 genomes]
rs12632054	0.80[ASN][1000 genomes]
rs12632154	0.82[ASN][1000 genomes]
rs12633462	0.86[ASN][1000 genomes]
rs12634402	0.83[ASN][1000 genomes]
rs12636307	0.88[ASN][1000 genomes]
rs12637368	0.82[ASN][1000 genomes]
rs12637911	0.88[ASN][1000 genomes]
rs12696175	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13059233	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13073496	0.81[EUR][1000 genomes]
rs13096471	0.80[EUR][1000 genomes]
rs1386868	0.82[EUR][1000 genomes]
rs1488172	0.82[EUR][1000 genomes]
rs1488186	0.90[ASN][1000 genomes]
rs150212	0.90[ASN][1000 genomes]
rs16847388	0.80[ASN][1000 genomes]
rs16854651	0.80[ASN][1000 genomes]
rs16854682	0.80[ASN][1000 genomes]
rs16854737	0.80[ASN][1000 genomes]
rs16854780	0.82[ASN][1000 genomes]
rs16854830	0.83[ASN][1000 genomes]
rs1844080	0.89[ASN][1000 genomes]
rs206252	0.82[EUR][1000 genomes]
rs206255	0.82[EUR][1000 genomes]
rs206256	0.80[EUR][1000 genomes]
rs206257	0.80[EUR][1000 genomes]
rs206265	0.90[ASN][1000 genomes]
rs206266	0.88[ASN][1000 genomes]
rs206868	0.88[ASN][1000 genomes]
rs34028622	0.86[ASN][1000 genomes]
rs34293607	0.88[ASN][1000 genomes]
rs56155538	0.80[ASN][1000 genomes]
rs56905693	0.80[ASN][1000 genomes]
rs57632819	0.80[ASN][1000 genomes]
rs58171652	0.80[ASN][1000 genomes]
rs58681440	0.80[ASN][1000 genomes]
rs59017390	0.83[ASN][1000 genomes]
rs59164820	0.80[ASN][1000 genomes]
rs59825045	0.80[ASN][1000 genomes]
rs59830210	0.86[ASN][1000 genomes]
rs60129151	0.80[ASN][1000 genomes]
rs60784369	0.80[ASN][1000 genomes]
rs60823164	0.86[ASN][1000 genomes]
rs61283411	0.84[ASN][1000 genomes]
rs66515733	0.81[ASN][1000 genomes]
rs66529141	0.86[ASN][1000 genomes]
rs66531018	0.88[ASN][1000 genomes]
rs66620503	0.80[ASN][1000 genomes]
rs66793835	0.86[ASN][1000 genomes]
rs66929427	0.80[ASN][1000 genomes]
rs66955449	0.80[ASN][1000 genomes]
rs67144490	0.88[ASN][1000 genomes]
rs67248547	0.80[ASN][1000 genomes]
rs67267202	0.80[ASN][1000 genomes]
rs67317870	0.83[ASN][1000 genomes]
rs67493252	0.85[ASN][1000 genomes]
rs67516390	0.80[ASN][1000 genomes]
rs6762633	0.83[ASN][1000 genomes]
rs6763455	0.80[ASN][1000 genomes]
rs67734003	0.80[ASN][1000 genomes]
rs6777496	0.83[ASN][1000 genomes]
rs6777613	0.80[ASN][1000 genomes]
rs6783892	0.80[ASN][1000 genomes]
rs6784037	0.80[ASN][1000 genomes]
rs6785512	0.82[EUR][1000 genomes]
rs6785683	0.88[ASN][1000 genomes]
rs6786203	0.83[ASN][1000 genomes]
rs6788073	0.80[ASN][1000 genomes]
rs6789411	0.83[ASN][1000 genomes]
rs67895998	0.88[ASN][1000 genomes]
rs6791255	0.88[ASN][1000 genomes]
rs67960907	0.88[ASN][1000 genomes]
rs6797599	0.80[ASN][1000 genomes]
rs6797966	0.82[EUR][1000 genomes]
rs68081807	0.80[ASN][1000 genomes]
rs6809351	0.80[ASN][1000 genomes]
rs68161621	0.88[ASN][1000 genomes]
rs73021348	0.80[ASN][1000 genomes]
rs73023183	0.88[ASN][1000 genomes]
rs73023185	0.88[ASN][1000 genomes]
rs73167695	0.80[ASN][1000 genomes]
rs73167696	0.80[ASN][1000 genomes]
rs73169619	0.80[ASN][1000 genomes]
rs73169622	0.82[ASN][1000 genomes]
rs73169623	0.82[ASN][1000 genomes]
rs73169635	0.86[ASN][1000 genomes]
rs73169647	0.88[ASN][1000 genomes]
rs73171818	0.82[ASN][1000 genomes]
rs7624280	0.80[ASN][1000 genomes]
rs7638886	0.80[ASN][1000 genomes]
rs7645155	0.80[ASN][1000 genomes]
rs7648005	0.81[ASN][1000 genomes]
rs7652357	0.80[ASN][1000 genomes]
rs7653615	0.80[ASN][1000 genomes]
rs9283622	0.82[EUR][1000 genomes]
rs9283623	0.82[EUR][1000 genomes]
rs9283624	0.81[EUR][1000 genomes]
rs9283625	0.81[EUR][1000 genomes]
rs9290155	0.82[EUR][1000 genomes]
rs9290159	0.82[EUR][1000 genomes]
rs9290160	0.82[EUR][1000 genomes]
rs9290165	0.82[EUR][1000 genomes]
rs9290166	0.82[EUR][1000 genomes]
rs9290171	0.82[EUR][1000 genomes]
rs9290173	0.82[EUR][1000 genomes]
rs9290174	0.81[EUR][1000 genomes]
rs9681293	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9681949	0.82[EUR][1000 genomes]
rs9714310	0.82[EUR][1000 genomes]
rs9822407	0.82[EUR][1000 genomes]
rs9877940	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv470994	chr3:162217993-162945834	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv869804	chr3:162414099-162776884	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757902	chr3:162471049-162742794	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2759197	chr3:162471049-162742794	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv869992	chr3:162483397-162776884	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv870318	chr3:162494699-162819441	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv592214	chr3:162504321-162721962	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv870056	chr3:162504822-162689567	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv592249	chr3:162512683-162721962	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv592250	chr3:162512683-162768964	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1813805	chr3:162513755-162721962	Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv1000858	chr3:162545705-162894644	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv829778	chr3:162565661-162732355	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv877775	chr3:162595758-162735677	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv877777	chr3:162618885-162727247	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv877778	chr3:162618885-162754958	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv877779	chr3:162618885-162932624	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv877780	chr3:162618885-162935109	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	nsv1006015	chr3:162626560-163159978	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv1008026	chr3:162628602-162726677	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv33448	chr3:162652132-162697412	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv877781	chr3:162664345-162754958	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv877782	chr3:162664345-162918387	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	nsv877783	chr3:162678550-162719684	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv877784	chr3:162678550-162733793	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv877785	chr3:162678550-162737519	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv877786	chr3:162678550-162754958	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv877787	chr3:162678550-162809107	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162676400-162681800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links