Variant report

Variant	rs9875910
Chromosome Location	chr3:23305557-23305558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1027380	0.80[EUR][1000 genomes]
rs11707094	0.87[ASN][1000 genomes]
rs11707450	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11708040	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11712500	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11712582	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11713392	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11715035	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11715107	0.91[YRI][hapmap]
rs1495133	0.91[YRI][hapmap]
rs1495134	0.89[GIH][hapmap];0.91[YRI][hapmap]
rs1692619	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1692621	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs1695180	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1695205	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17013268	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs17342980	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17401836	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17402378	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1874234	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1874502	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1874503	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1994953	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2036044	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2036045	0.89[CHB][hapmap];0.91[YRI][hapmap]
rs2047339	0.82[EUR][1000 genomes]
rs2055155	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs2055156	1.00[ASW][hapmap];0.94[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055157	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2101811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2132144	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2132145	0.86[GIH][hapmap];1.00[YRI][hapmap]
rs2132146	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2132147	0.86[GIH][hapmap]
rs2132148	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[ASN][1000 genomes]
rs2132149	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs2173057	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs2201484	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2359754	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2359755	0.93[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap]
rs2359761	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs3104242	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35194124	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35613382	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4334589	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4578972	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4858063	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4858068	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4858070	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4858487	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858489	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858490	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858495	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858499	0.94[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858507	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5023615	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59185768	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62252657	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62255292	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62255293	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6550759	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6550760	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6762546	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6765758	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6774214	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6780388	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes]
rs6790327	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6799132	0.83[AMR][1000 genomes]
rs6801824	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs704535	0.81[EUR][1000 genomes]
rs7621680	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7629327	0.83[CEU][hapmap];0.91[YRI][hapmap]
rs7637485	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7643705	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7648425	0.84[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs7653868	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778457	0.82[EUR][1000 genomes]
rs778458	0.82[EUR][1000 genomes]
rs778463	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.84[LWK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs778469	0.81[EUR][1000 genomes]
rs778483	0.94[CEU][hapmap];0.83[JPT][hapmap]
rs778492	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs778497	1.00[CEU][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs778502	1.00[CEU][hapmap]
rs778525	0.94[CEU][hapmap]
rs778527	0.94[CEU][hapmap]
rs903520	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs923996	0.90[ASN][1000 genomes]
rs931609	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.94[LWK][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9757330	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9758590	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9815299	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9823684	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9836135	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[ASN][1000 genomes]
rs9840808	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9841336	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9844558	0.86[GIH][hapmap]
rs9848331	1.00[YRI][hapmap]
rs9848389	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9849679	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9863465	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23292800-23306800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:23295200-23321800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:23297000-23307000	Weak transcription	Primary B cells from cord blood	blood
4	chr3:23298800-23311000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
6	chr3:23299000-23306800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:23299000-23314200	Weak transcription	Primary T cells from cord blood	blood
8	chr3:23302400-23305600	Weak transcription	HSMMtube	muscle
9	chr3:23302400-23305800	Weak transcription	Psoas Muscle	Psoas
10	chr3:23302400-23312800	Weak transcription	Lung	lung
11	chr3:23302400-23321000	Weak transcription	Pancreas	Pancrea
12	chr3:23303800-23306800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:23303800-23307200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:23304200-23305600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:23304200-23306200	Enhancers	HUVEC	blood vessel
16	chr3:23304200-23306600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:23304200-23307200	Enhancers	Osteobl	bone
18	chr3:23304400-23306800	Enhancers	NHEK	skin
19	chr3:23304400-23307000	Enhancers	HMEC	breast
20	chr3:23304400-23307200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:23304400-23307200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:23304400-23307200	Enhancers	NHDF-Ad	bronchial
23	chr3:23304800-23305600	Weak transcription	NHLF	lung
24	chr3:23304800-23310800	Weak transcription	Fetal Lung	lung
25	chr3:23305200-23307200	Enhancers	HSMM	muscle
26	chr3:23305200-23311000	Weak transcription	Brain Hippocampus Middle	brain
27	chr3:23305400-23305600	Enhancers	Brain Substantia Nigra	brain
28	chr3:23305400-23305600	Enhancers	A549	lung
29	chr3:23305400-23305600	Enhancers	NH-A	brain
30	chr3:23305400-23307000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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