Variant report
| Variant | rs9877461 |
|---|---|
| Chromosome Location | chr3:25363620-25363621 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11707139 | 0.90[EUR][1000 genomes] |
| rs11709623 | 0.90[EUR][1000 genomes] |
| rs11709732 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11714481 | 0.90[EUR][1000 genomes] |
| rs11716065 | 0.90[EUR][1000 genomes] |
| rs11717848 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11718046 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11718836 | 0.88[EUR][1000 genomes] |
| rs11720675 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11721271 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1483837 | 0.81[ASN][1000 genomes] |
| rs17016187 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap] |
| rs17016260 | 0.88[EUR][1000 genomes] |
| rs17588596 | 1.00[CEU][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes] |
| rs2164476 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs57697446 | 0.88[EUR][1000 genomes] |
| rs6550962 | 0.88[EUR][1000 genomes] |
| rs6550963 | 0.88[EUR][1000 genomes] |
| rs6550966 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7615094 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7623030 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7649070 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9822411 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949035 | chr3:25194301-26084890 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 68 gene(s) | inside rSNPs | diseases |
| 2 | nsv876632 | chr3:25325479-25366205 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9877461 | UBE2D3 | trans | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
