Variant report

Variant	rs9879517
Chromosome Location	chr3:102334451-102334452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1913718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58984852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59399057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614086	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7619933	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1843717	chr3:102251299-102364297	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102332800-102334600	Enhancers	Fetal Lung	lung
2	chr3:102333400-102334600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:102333400-102334600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:102333600-102334600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:102333800-102334800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:102334400-102335400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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