Variant report

Variant	rs9879782
Chromosome Location	chr3:119446705-119446706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12721613	1.00[MEX][hapmap]
rs1523128	1.00[MEX][hapmap]
rs1523129	1.00[MEX][hapmap]
rs17183897	1.00[AMR][1000 genomes]
rs1920543	1.00[AMR][1000 genomes]
rs2461831	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2472661	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2472668	1.00[MEX][hapmap]
rs2688635	1.00[MEX][hapmap]
rs2688643	1.00[MEX][hapmap]
rs2692619	1.00[MEX][hapmap]
rs4234663	1.00[MEX][hapmap]
rs4355316	1.00[MEX][hapmap]
rs4411917	1.00[MEX][hapmap]
rs4687883	1.00[MEX][hapmap]
rs4688038	1.00[MEX][hapmap]
rs6438543	1.00[MEX][hapmap]
rs7649166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs940087	1.00[MEX][hapmap]
rs9816750	1.00[MEX][hapmap]
rs9832865	1.00[AMR][1000 genomes]
rs9838456	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9844770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460834	chr3:119384163-119458851	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv591390	chr3:119384163-119458851	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119422200-119458200	Weak transcription	Aorta	Aorta
2	chr3:119423000-119463000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:119423000-119464400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:119423200-119464200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:119423200-119471600	Weak transcription	Fetal Kidney	kidney
6	chr3:119423400-119458200	Weak transcription	Brain Substantia Nigra	brain
7	chr3:119423800-119449000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:119428800-119469200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:119431200-119470400	Weak transcription	Gastric	stomach
10	chr3:119435400-119478200	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:119436800-119450200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:119436800-119450600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:119436800-119462800	Weak transcription	Pancreas	Pancrea
14	chr3:119438200-119449200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:119444000-119453000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:119444200-119447000	Weak transcription	Spleen	Spleen
17	chr3:119446000-119446800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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