Variant report

Variant	rs9882561
Chromosome Location	chr3:135643655-135643656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2400731	1.00[AFR][1000 genomes]
rs7630276	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs977562	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135641200-135645800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:135641800-135645600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:135642000-135645600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:135642000-135645600	Weak transcription	NHDF-Ad	bronchial
5	chr3:135642000-135646000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:135642200-135645400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:135642200-135645400	Weak transcription	NHEK	skin
8	chr3:135642200-135645600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:135642200-135646000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:135642400-135645400	Weak transcription	HMEC	breast
11	chr3:135643400-135644000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:135643600-135643800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:135643600-135644000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:135643600-135644000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:135643600-135644000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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