Variant report

Variant	rs9884401
Chromosome Location	chr4:143881142-143881143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143881105..143883700-chr4:144027796..144029991,2	MCF-7	breast:

Extended variants
information (count: 174 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10003726	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10004713	0.88[EUR][1000 genomes]
rs10010316	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10011348	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10014390	0.86[EUR][1000 genomes]
rs10017013	0.88[EUR][1000 genomes]
rs10017804	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10019031	0.86[EUR][1000 genomes]
rs10024265	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10026166	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10028292	0.85[EUR][1000 genomes]
rs10030770	0.81[EUR][1000 genomes]
rs10032057	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10032156	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10033548	0.86[EUR][1000 genomes]
rs10034074	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10049511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10050319	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10084818	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1012011	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1012012	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10212852	0.94[EUR][1000 genomes]
rs10213025	0.94[EUR][1000 genomes]
rs10519675	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11932563	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11936427	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11936467	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11938835	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11943509	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11947590	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13101590	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13101986	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13114894	0.88[EUR][1000 genomes]
rs13115045	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13116365	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13122950	0.86[EUR][1000 genomes]
rs13124363	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13126927	0.86[EUR][1000 genomes]
rs13128465	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13139051	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13139834	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13140271	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13141166	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141176	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145393	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13147030	0.86[EUR][1000 genomes]
rs13147901	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13151684	0.87[EUR][1000 genomes]
rs13435685	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1372237	0.88[EUR][1000 genomes]
rs1372238	0.88[EUR][1000 genomes]
rs1372239	0.88[EUR][1000 genomes]
rs1441414	0.88[EUR][1000 genomes]
rs1441420	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1441421	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510134	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1510136	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510137	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510139	0.88[EUR][1000 genomes]
rs1588407	0.94[EUR][1000 genomes]
rs1605953	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1605954	0.86[EUR][1000 genomes]
rs1605955	0.86[EUR][1000 genomes]
rs17017012	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17017081	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17678304	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1876938	0.88[EUR][1000 genomes]
rs1876939	0.88[EUR][1000 genomes]
rs1899319	0.88[EUR][1000 genomes]
rs1912393	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2003851	0.88[EUR][1000 genomes]
rs2083619	0.88[EUR][1000 genomes]
rs2120843	0.86[EUR][1000 genomes]
rs2120844	0.86[EUR][1000 genomes]
rs2136644	0.94[EUR][1000 genomes]
rs2166187	0.86[EUR][1000 genomes]
rs2322908	0.86[EUR][1000 genomes]
rs28390284	0.86[EUR][1000 genomes]
rs28404663	0.86[EUR][1000 genomes]
rs28460827	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28493626	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28497592	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28516045	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28560068	0.88[EUR][1000 genomes]
rs28577925	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28603287	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28609754	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625957	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28693771	0.88[EUR][1000 genomes]
rs28749775	0.86[EUR][1000 genomes]
rs28789215	0.88[EUR][1000 genomes]
rs28814581	0.86[EUR][1000 genomes]
rs28814625	0.86[EUR][1000 genomes]
rs28849788	0.86[EUR][1000 genomes]
rs28850637	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28854016	0.86[EUR][1000 genomes]
rs34011238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34596213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34815588	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34959108	0.86[EUR][1000 genomes]
rs35582432	0.85[EUR][1000 genomes]
rs35668471	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4690706	0.86[EUR][1000 genomes]
rs4690708	0.86[EUR][1000 genomes]
rs4690709	0.86[EUR][1000 genomes]
rs4690711	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4690712	0.94[EUR][1000 genomes]
rs4690733	0.86[EUR][1000 genomes]
rs4690734	0.86[EUR][1000 genomes]
rs4690735	0.86[EUR][1000 genomes]
rs4690736	0.88[EUR][1000 genomes]
rs4690738	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690740	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4690744	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56027920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56283150	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62330374	0.88[EUR][1000 genomes]
rs6537135	0.86[EUR][1000 genomes]
rs6537136	0.88[EUR][1000 genomes]
rs66682110	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6815888	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6818484	0.81[EUR][1000 genomes]
rs6820975	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6822869	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6826496	0.88[EUR][1000 genomes]
rs6827913	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6833501	0.85[EUR][1000 genomes]
rs6833521	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6834625	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6834860	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6837806	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6840593	0.82[EUR][1000 genomes]
rs6844759	0.81[EUR][1000 genomes]
rs6845018	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6847097	0.88[EUR][1000 genomes]
rs716878	0.88[EUR][1000 genomes]
rs732600	0.88[EUR][1000 genomes]
rs732601	0.88[EUR][1000 genomes]
rs7655380	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656332	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7660391	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660803	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666854	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7668116	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7668378	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7668605	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7670901	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673332	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7681654	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7683234	0.86[EUR][1000 genomes]
rs7683364	0.81[EUR][1000 genomes]
rs7683834	0.86[EUR][1000 genomes]
rs7683962	0.81[EUR][1000 genomes]
rs7688031	0.86[EUR][1000 genomes]
rs7689077	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7689462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7690592	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692119	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7692881	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7696326	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7699632	0.84[EUR][1000 genomes]
rs9308153	0.86[EUR][1000 genomes]
rs9308154	0.88[EUR][1000 genomes]
rs9308155	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9308156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9308157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9308162	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9683718	0.86[EUR][1000 genomes]
rs9999108	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143874800-143881200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:143875200-143882000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:143879000-143882800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:143879200-143882400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:143880200-143881600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:143880200-143883400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr4:143880400-143882400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr4:143880400-143884600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:143880600-143882600	Enhancers	Fetal Lung	lung
10	chr4:143880600-143882600	Enhancers	Stomach Smooth Muscle	stomach
11	chr4:143880800-143882000	Weak transcription	HSMMtube	muscle

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