Variant report

Variant	rs9885915
Chromosome Location	chr6:101870981-101870982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10214500	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214828	1.00[ASW][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12171555	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1890276	1.00[MEX][hapmap]
rs2787566	1.00[MEX][hapmap]
rs2852524	1.00[MEX][hapmap]
rs55767962	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55815021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59361029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918619	1.00[MEX][hapmap]
rs6938300	1.00[MEX][hapmap]
rs6939312	1.00[MEX][hapmap]
rs73502619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73761326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9485499	1.00[MEX][hapmap]
rs9498584	1.00[AMR][1000 genomes]
rs9885636	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101851000-101882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101860800-101871000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:101864400-101871000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:101869200-101878400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:101870000-101871000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:101870000-101871200	Enhancers	Fetal Brain Male	brain
8	chr6:101870400-101871000	Enhancers	Fetal Brain Female	brain
9	chr6:101870600-101882600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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