Variant report

Variant	rs9885990
Chromosome Location	chr7:104321037-104321038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10233987	0.90[CHB][hapmap]
rs10241057	0.81[CEU][hapmap]
rs10244859	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10256346	0.92[EUR][1000 genomes]
rs10273020	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10279337	0.90[CHB][hapmap]
rs10279375	0.90[CHB][hapmap]
rs10464615	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs11767604	0.90[CHB][hapmap]
rs11767619	0.86[CHB][hapmap]
rs11768712	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11982043	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12531723	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12534285	0.88[ASN][1000 genomes]
rs12535033	0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs12536801	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12537797	0.81[CEU][hapmap]
rs12705261	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12705263	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12705264	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs13241253	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs13242612	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs17269890	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4255068	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4311596	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4419737	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4496900	0.82[JPT][hapmap]
rs4512324	0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4513902	0.81[CEU][hapmap]
rs4517051	0.81[CHB][hapmap]
rs4566971	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs4624947	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4730035	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4730037	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466014	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6943307	0.81[CEU][hapmap]
rs6944469	0.90[CHB][hapmap]
rs6945225	0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs6955455	0.80[CHB][hapmap]
rs6962309	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs7782065	0.81[CEU][hapmap]
rs7782285	0.88[ASN][1000 genomes]
rs7801294	0.88[ASN][1000 genomes]
rs9886292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967437	chr7:104312412-104323208	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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