Variant report

Variant	rs9886292
Chromosome Location	chr7:104321056-104321057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10233987	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10244859	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10256346	0.92[EUR][1000 genomes]
rs10273020	1.00[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs10279337	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs10279375	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10464615	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11767604	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11767619	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11768712	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11982043	1.00[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs12531723	0.91[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs12534285	0.89[ASN][1000 genomes]
rs12535033	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs12536801	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12705261	0.91[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs12705263	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12705264	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13241253	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13242612	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17269890	1.00[CEU][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs4255068	0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4311596	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4419737	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4496900	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs4512324	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4566971	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4624947	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4730035	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4730037	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6466014	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6944469	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6945225	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6962309	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7782285	0.89[ASN][1000 genomes]
rs7801294	0.89[ASN][1000 genomes]
rs9885990	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967437	chr7:104312412-104323208	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9886292	ATXN7L1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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