Variant report

Variant	rs988699
Chromosome Location	chr7:124409814-124409815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:124405542..124407199-chr7:124408362..124410580,2	MCF-7	breast:
2	chr7:124401538..124403710-chr7:124408710..124411016,2	K562	blood:
3	chr7:124408284..124411028-chr7:124413080..124414599,2	K562	blood:
4	chr7:124404767..124406486-chr7:124408146..124409913,2	K562	blood:

Variant related genes	Relation type
ENSG00000170775	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10225552	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10228201	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10230610	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10233385	0.84[EUR][1000 genomes]
rs10241173	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10244817	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10246424	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10264060	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10265763	0.86[EUR][1000 genomes]
rs10281582	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1541416	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1541418	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17246404	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2107939	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2239532	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286175	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2402751	0.86[ASN][1000 genomes]
rs2402752	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28523990	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28638102	0.84[EUR][1000 genomes]
rs34986416	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3925331	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56387611	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66513837	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66526112	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67084428	0.84[EUR][1000 genomes]
rs68007199	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6952721	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs720613	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs720614	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs722560	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs727505	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7777947	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7790856	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7791430	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7795943	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7801661	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7806680	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs989177	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs988699	GPR37	cis	lung	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124406200-124410800	Weak transcription	HUVEC	blood vessel
2	chr7:124406800-124410000	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:124406800-124410400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:124406800-124410600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:124406800-124410600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:124406800-124410600	Weak transcription	Brain Substantia Nigra	brain
7	chr7:124406800-124410800	Weak transcription	Brain Anterior Caudate	brain
8	chr7:124406800-124411000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:124406800-124412000	Weak transcription	Brain Inferior Temporal Lobe	brain

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