Variant report

Variant	rs9887769
Chromosome Location	chr1:211433420-211433421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:210543442..210549646-chr1:211430130..211435518,10	MCF-7	breast:
2	chr1:211431689..211435313-chr1:211451941..211455577,4	K562	blood:
3	chr1:211432252..211434880-chr1:211475465..211477456,2	K562	blood:
4	chr1:210545161..210548943-chr1:211431162..211434734,10	MCF-7	breast:
5	chr1:210546304..210548726-chr1:211433366..211435093,2	K562	blood:
6	chr1:211432764..211434575-chr1:211756364..211758782,2	K562	blood:
7	chr1:211429664..211434083-chr1:211498779..211503937,6	K562	blood:
8	chr1:211430859..211434419-chr1:211555069..211558654,5	K562	blood:
9	chr1:211429664..211435180-chr1:211498779..211503937,6	K562	blood:
10	chr1:210545931..210548726-chr1:211432289..211435093,3	K562	blood:
11	chr1:211431809..211433608-chr1:212207599..212209157,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143476	Chromatin interaction
ENSG00000082512	Chromatin interaction
ENSG00000143493	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000153363	Chromatin interaction
ENSG00000261314	Chromatin interaction
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10779551	0.98[ASN][1000 genomes]
rs10863885	0.96[ASN][1000 genomes]
rs11119711	0.93[ASN][1000 genomes]
rs11119714	0.98[ASN][1000 genomes]
rs11119717	0.94[ASN][1000 genomes]
rs11119720	0.94[ASN][1000 genomes]
rs11119725	0.80[ASN][1000 genomes]
rs11119727	0.84[EUR][1000 genomes]
rs11577764	0.81[EUR][1000 genomes]
rs12032988	0.94[ASN][1000 genomes]
rs12041794	0.98[ASN][1000 genomes]
rs12042216	0.98[ASN][1000 genomes]
rs12046975	0.98[ASN][1000 genomes]
rs12095365	0.84[ASN][1000 genomes]
rs17017360	0.94[ASN][1000 genomes]
rs17017401	0.80[ASN][1000 genomes]
rs2175633	0.81[EUR][1000 genomes]
rs4443952	0.81[EUR][1000 genomes]
rs4540732	0.85[ASN][1000 genomes]
rs4951521	0.81[EUR][1000 genomes]
rs4951743	0.81[EUR][1000 genomes]
rs59019096	0.95[ASN][1000 genomes]
rs6663729	0.81[EUR][1000 genomes]
rs6698113	0.81[EUR][1000 genomes]
rs6698191	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343270	chr1:211431354-211434202	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv3352231	chr1:211431654-211434427	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3373410	chr1:211432129-211434077	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211430600-211434600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:211430600-211434600	Active TSS	H1 Cell Line	embryonic stem cell
3	chr1:211430800-211434600	Active TSS	Aorta	Aorta
4	chr1:211431000-211434400	Active TSS	Brain Anterior Caudate	brain
5	chr1:211431000-211434400	Active TSS	NHLF	lung
6	chr1:211431000-211434800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:211431000-211434800	Active TSS	Fetal Intestine Large	intestine
8	chr1:211431200-211434200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:211431200-211434200	Active TSS	Fetal Muscle Trunk	muscle
10	chr1:211431200-211434200	Active TSS	Fetal Muscle Leg	muscle
11	chr1:211431200-211434400	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr1:211431200-211434400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:211431200-211434400	Active TSS	Placenta Amnion	Placenta Amnion
14	chr1:211431200-211434600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:211431200-211434600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:211431200-211434600	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr1:211431200-211434600	Active TSS	Fetal Stomach	stomach
18	chr1:211431200-211434600	Active TSS	K562	blood
19	chr1:211431200-211434800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:211431200-211434800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:211431200-211434800	Active TSS	Fetal Intestine Small	intestine
22	chr1:211431200-211435000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:211431400-211433800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr1:211431400-211434400	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr1:211431400-211434400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:211431400-211434400	Active TSS	Colonic Mucosa	Colon
27	chr1:211431400-211434400	Active TSS	Colon Smooth Muscle	Colon
28	chr1:211431400-211434400	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr1:211431400-211434400	Active TSS	Fetal Heart	heart
30	chr1:211431400-211434400	Active TSS	Fetal Kidney	kidney
31	chr1:211431400-211434400	Active TSS	Fetal Lung	lung
32	chr1:211431400-211434400	Active TSS	Lung	lung
33	chr1:211431400-211434600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr1:211431400-211434600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr1:211431400-211434600	Active TSS	Ovary	ovary
36	chr1:211431400-211434600	Active TSS	Pancreas	Pancrea
37	chr1:211431400-211434600	Active TSS	Rectal Smooth Muscle	rectum
38	chr1:211431400-211434600	Active TSS	Thymus	Thymus
39	chr1:211431400-211434600	Active TSS	HSMMtube	muscle
40	chr1:211431400-211434800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:211431400-211434800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:211431400-211434800	Active TSS	Left Ventricle	heart
43	chr1:211431400-211434800	Active TSS	Psoas Muscle	Psoas
44	chr1:211431400-211434800	Active TSS	Right Ventricle	heart
45	chr1:211431400-211435000	Active TSS	NHDF-Ad	bronchial
46	chr1:211431600-211434400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr1:211431600-211434400	Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr1:211431600-211434400	Active TSS	Fetal Brain Male	brain
49	chr1:211431600-211434400	Active TSS	Gastric	stomach
50	chr1:211431600-211434400	Active TSS	Sigmoid Colon	Sigmoid Colon

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