Variant report

Variant	rs9888599
Chromosome Location	chr14:32865696-32865697
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32842992..32845241-chr14:32865436..32867391,2	MCF-7	breast:
2	chr14:32864947..32867000-chr14:32868325..32869881,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1805261	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1951182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1951184	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1951691	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2025261	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031106	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784181	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv976820	chr14:32860301-32873799	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32849000-32867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:32854200-32866600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32862000-32867000	Weak transcription	Brain Germinal Matrix	brain
4	chr14:32864400-32866800	Weak transcription	Fetal Heart	heart
5	chr14:32865000-32867800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr14:32865400-32865800	Enhancers	Esophagus	oesophagus
7	chr14:32865400-32866200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:32865400-32868000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:32865400-32868000	Enhancers	Brain Angular Gyrus	brain
10	chr14:32865400-32868800	Enhancers	Brain Cingulate Gyrus	brain
11	chr14:32865400-32871400	Enhancers	Brain Anterior Caudate	brain
12	chr14:32865600-32865800	Enhancers	Brain Substantia Nigra	brain
13	chr14:32865600-32865800	Enhancers	Left Ventricle	heart
14	chr14:32865600-32866200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr14:32865600-32866200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:32865600-32866400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:32865600-32866800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:32865600-32868000	Enhancers	NHEK	skin
19	chr14:32865600-32868400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:32865600-32868800	Enhancers	Brain Hippocampus Middle	brain
21	chr14:32865600-32876400	Weak transcription	Fetal Brain Male	brain

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