Variant report

Variant	rs9888610
Chromosome Location	chr14:37508406-37508407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37508396..37513083-chr14:37513414..37517203,5	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10047907	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10047908	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10131531	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10133042	0.90[ASN][1000 genomes]
rs10135756	0.88[ASN][1000 genomes]
rs10136870	0.90[ASN][1000 genomes]
rs10137595	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10137611	0.90[ASN][1000 genomes]
rs10148080	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10148097	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10148311	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10148351	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10148426	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11156932	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12433348	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12892728	0.90[ASN][1000 genomes]
rs12894067	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12894251	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12897058	0.90[ASN][1000 genomes]
rs1467484	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467485	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467486	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1467487	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467488	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467489	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467490	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467491	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467492	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467493	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1555333	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106133	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1950816	0.80[EUR][1000 genomes]
rs1956422	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1956425	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2057271	0.81[EUR][1000 genomes]
rs2180600	0.90[ASN][1000 genomes]
rs2415374	0.90[ASN][1000 genomes]
rs2415375	0.90[ASN][1000 genomes]
rs2415376	0.90[ASN][1000 genomes]
rs2415377	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2415378	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28437272	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28466578	0.90[ASN][1000 genomes]
rs34592617	0.90[ASN][1000 genomes]
rs35844261	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36105433	0.90[ASN][1000 genomes]
rs4328351	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4408459	0.90[ASN][1000 genomes]
rs6571773	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6571774	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6571775	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6571778	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6571779	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6571780	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7142225	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs714268	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs714269	0.90[ASN][1000 genomes]
rs7146275	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7149490	0.90[ASN][1000 genomes]
rs7153530	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7160964	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359049	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7359050	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8004339	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8005022	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8008912	0.87[ASN][1000 genomes]
rs8009178	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8011174	0.81[EUR][1000 genomes]
rs8011715	0.88[ASN][1000 genomes]
rs8014426	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8016428	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8017060	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8022248	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9919903	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37505200-37509000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr14:37507600-37508600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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