Variant report

Variant	rs9888668
Chromosome Location	chr15:77170257-77170258
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77158379..77160705-chr15:77168926..77171582,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2469205	1.00[YRI][hapmap]
rs279993	0.94[YRI][hapmap]
rs279995	0.88[YRI][hapmap]
rs28744566	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs3099144	0.89[YRI][hapmap]
rs3099148	0.94[YRI][hapmap]
rs3102715	1.00[YRI][hapmap]
rs3102718	0.94[YRI][hapmap]
rs3764244	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	esv1803942	chr15:77151005-77210457	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77111600-77174200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:77112200-77196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:77125800-77175400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:77133200-77196800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:77140800-77195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:77141400-77171600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:77142000-77175800	Weak transcription	Fetal Brain Male	brain
8	chr15:77142000-77195800	Weak transcription	Right Ventricle	heart
9	chr15:77144800-77179000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:77146200-77175400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:77146400-77196400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:77147800-77173800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:77147800-77177200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:77148200-77175200	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:77148400-77174800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:77148600-77195600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:77148800-77181000	Weak transcription	Fetal Kidney	kidney
18	chr15:77148800-77195600	Weak transcription	Dnd41	blood
19	chr15:77151600-77171800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:77154400-77179600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:77156200-77171000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:77156400-77176400	Weak transcription	Psoas Muscle	Psoas
23	chr15:77158200-77174000	Weak transcription	Brain Anterior Caudate	brain
24	chr15:77158600-77175400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:77158600-77179800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:77158600-77180600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:77158600-77190800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:77158800-77175400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:77158800-77177800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:77158800-77195600	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:77158800-77195600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:77159400-77176800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:77161400-77188800	Weak transcription	Fetal Heart	heart
34	chr15:77161800-77174400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr15:77163600-77173400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr15:77164400-77173400	Weak transcription	Fetal Thymus	thymus
37	chr15:77164800-77172400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:77164800-77173800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr15:77166200-77175400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:77166800-77171400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:77166800-77177800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:77167600-77171400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr15:77167600-77177200	Weak transcription	Hela-S3	cervix
44	chr15:77168000-77174800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:77168000-77179600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:77168000-77179600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:77168200-77172000	Weak transcription	Liver	Liver
48	chr15:77168200-77172800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:77168200-77177400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:77168400-77171400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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