Variant report

Variant	rs9891131
Chromosome Location	chr17:37911521-37911522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37892523..37898235-chr17:37904182..37913977,22	MCF-7	breast:
2	chr17:37909990..37912890-chr17:37955777..37957738,2	MCF-7	breast:
3	chr17:37771753..37773281-chr17:37910069..37912599,2	K562	blood:
4	chr17:37858985..37861053-chr17:37910558..37912963,2	MCF-7	breast:
5	chr17:37772682..37776519-chr17:37907348..37911982,7	MCF-7	breast:
6	chr17:37910764..37912781-chr17:37948421..37950091,2	MCF-7	breast:
7	chr17:37885072..37889612-chr17:37908286..37912584,6	MCF-7	breast:
8	chr17:37907935..37911541-chr17:37914774..37918367,3	K562	blood:
9	chr17:37909095..37912398-chr17:37915882..37918594,4	MCF-7	breast:
10	chr17:37875233..37878023-chr17:37910337..37912992,2	MCF-7	breast:
11	chr17:37885422..37887892-chr17:37909148..37911946,2	MCF-7	breast:
12	chr17:37907336..37908918-chr17:37910848..37912777,2	MCF-7	breast:
13	chr17:37905061..37908397-chr17:37908549..37911938,4	MCF-7	breast:
14	chr17:37909648..37912266-chr17:38136324..38138333,2	K562	blood:
15	chr17:37761755..37764258-chr17:37910151..37911878,2	K562	blood:
16	chr17:37795949..37798919-chr17:37909347..37911771,2	K562	blood:
17	chr17:37909648..37914905-chr17:37919305..37927863,11	MCF-7	breast:
18	chr17:37774213..37778029-chr17:37909285..37912435,4	K562	blood:
19	chr17:37908791..37912830-chr17:37925750..37930091,5	K562	blood:
20	chr17:37789315..37792571-chr17:37910228..37913282,4	K562	blood:
21	chr17:37910518..37912033-chr17:37928205..37930091,2	K562	blood:
22	chr17:37777309..37780105-chr17:37909118..37911531,3	MCF-7	breast:
23	chr17:37616757..37620297-chr17:37908971..37911945,3	K562	blood:
24	chr17:37903978..37906952-chr17:37910372..37912419,2	K562	blood:
25	chr17:37673655..37675893-chr17:37909404..37912318,2	K562	blood:
26	chr17:37892158..37901988-chr17:37904094..37913282,26	MCF-7	breast:
27	chr17:37803422..37805216-chr17:37908761..37911561,2	K562	blood:
28	chr17:37775146..37779845-chr17:37909073..37911911,5	K562	blood:
29	chr17:37790735..37794088-chr17:37909085..37913282,4	K562	blood:
30	chr17:37909376..37912567-chr17:37922952..37926689,4	MCF-7	breast:
31	chr17:37909855..37912536-chr17:38125394..38127110,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000141736	Chromatin interaction
ENSG00000141738	Chromatin interaction
ENSG00000141741	Chromatin interaction
ENSG00000214546	Chromatin interaction
ENSG00000264198	Chromatin interaction
ENSG00000167258	Chromatin interaction
ENSG00000171532	Chromatin interaction
ENSG00000108344	Chromatin interaction
ENSG00000131748	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12937330	1.00[MEX][hapmap]
rs1453560	1.00[MEX][hapmap]
rs2941509	1.00[GIH][hapmap]
rs3169572	1.00[GIH][hapmap]
rs34758895	0.95[AMR][1000 genomes]
rs35770042	0.88[EUR][1000 genomes]
rs4252665	1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs7503018	1.00[MEX][hapmap]
rs8076347	1.00[MEX][hapmap]
rs8079075	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9652840	1.00[CEU][hapmap]
rs9894370	0.95[AMR][1000 genomes]
rs9896940	1.00[CEU][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes]
rs9901483	1.00[MEX][hapmap]
rs9907966	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9908694	1.00[MEX][hapmap]
rs9909432	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910678	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911688	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9913769	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9913957	1.00[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv908219	chr17:37880265-37917633	Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	esv3360194	chr17:37909251-37911799	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9891131	RP11-387H17.4	cis	Muscle Skeletal	GTEx

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37909200-37912000	Flanking Active TSS	Dnd41	blood
2	chr17:37909400-37912600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr17:37909600-37911800	Active TSS	Rectal Smooth Muscle	rectum
4	chr17:37909800-37911600	Active TSS	H1 Cell Line	embryonic stem cell
5	chr17:37909800-37911600	Active TSS	H9 Cell Line	embryonic stem cell
6	chr17:37909800-37911600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:37909800-37911800	Active TSS	Brain Anterior Caudate	brain
8	chr17:37909800-37912200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:37910000-37911600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:37910000-37911800	Active TSS	Sigmoid Colon	Sigmoid Colon
11	chr17:37910200-37911600	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr17:37910200-37911600	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr17:37910200-37911800	Active TSS	Brain Hippocampus Middle	brain
14	chr17:37910400-37911600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr17:37910600-37911800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:37910800-37911600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:37910800-37911600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
18	chr17:37910800-37911600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr17:37910800-37912400	Flanking Active TSS	Fetal Thymus	thymus
20	chr17:37910800-37912800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr17:37910800-37913000	Flanking Active TSS	Primary B cells from peripheral blood	blood
22	chr17:37911000-37911600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr17:37911000-37911600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr17:37911000-37911600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
25	chr17:37911000-37911600	Flanking Active TSS	Fetal Muscle Leg	muscle
26	chr17:37911000-37911600	Flanking Active TSS	Placenta	Placenta
27	chr17:37911000-37911600	Flanking Active TSS	Right Ventricle	heart
28	chr17:37911000-37911600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr17:37911000-37911600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr17:37911000-37912000	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr17:37911000-37912200	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr17:37911000-37912200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr17:37911000-37912200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr17:37911000-37912200	Enhancers	Fetal Heart	heart
35	chr17:37911000-37912200	Flanking Bivalent TSS/Enh	HepG2	liver
36	chr17:37911000-37912400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr17:37911000-37912400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr17:37911000-37912800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr17:37911200-37911600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr17:37911200-37911600	Enhancers	Liver	Liver
41	chr17:37911200-37911600	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr17:37911200-37911600	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr17:37911200-37911600	Flanking Active TSS	Fetal Intestine Large	intestine
44	chr17:37911200-37911600	Flanking Active TSS	Fetal Intestine Small	intestine
45	chr17:37911200-37911600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
46	chr17:37911200-37911600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr17:37911200-37911600	Flanking Active TSS	Hela-S3	cervix
48	chr17:37911200-37911800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr17:37911200-37911800	Weak transcription	Fetal Kidney	kidney
50	chr17:37911200-37911800	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links