Variant report

Variant	rs9894370
Chromosome Location	chr17:37926004-37926005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:37925962..37928812-chr17:37930496..37932656,3	K562	blood:
2	chr17:37924784..37926375-chr17:37969681..37972585,2	MCF-7	breast:
3	chr17:37919667..37922479-chr17:37925308..37929040,3	K562	blood:
4	chr17:37924711..37926315-chr17:37927219..37929986,2	MCF-7	breast:
5	chr17:37894301..37895918-chr17:37923821..37926664,2	MCF-7	breast:
6	chr17:37909376..37912567-chr17:37922952..37926689,4	MCF-7	breast:
7	chr17:37880907..37883423-chr17:37923415..37926251,2	MCF-7	breast:
8	chr17:37924386..37926386-chr17:37944226..37946350,2	MCF-7	breast:
9	chr17:37921292..37924332-chr17:37924754..37927862,3	MCF-7	breast:
10	chr17:37908791..37912830-chr17:37925750..37930091,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000141738	Chromatin interaction
ENSG00000265178	Chromatin interaction
ENSG00000264198	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs12709364	0.92[EUR][1000 genomes]
rs12937330	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12938117	0.92[EUR][1000 genomes]
rs12938617	0.89[EUR][1000 genomes]
rs12938749	0.92[EUR][1000 genomes]
rs12940616	0.92[EUR][1000 genomes]
rs12942660	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12945253	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12946040	0.92[EUR][1000 genomes]
rs12946188	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12946792	0.92[EUR][1000 genomes]
rs12947480	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12952146	0.92[EUR][1000 genomes]
rs13313561	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13313564	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13313573	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13380871	0.92[EUR][1000 genomes]
rs1453560	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1510475	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16965367	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2313429	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs28392589	0.92[EUR][1000 genomes]
rs28403951	0.92[EUR][1000 genomes]
rs28449671	0.92[EUR][1000 genomes]
rs28535471	0.92[EUR][1000 genomes]
rs28537796	0.92[EUR][1000 genomes]
rs28580691	0.92[EUR][1000 genomes]
rs28621669	0.92[EUR][1000 genomes]
rs28648398	0.92[EUR][1000 genomes]
rs28661421	0.92[EUR][1000 genomes]
rs28695941	0.92[EUR][1000 genomes]
rs28723017	0.92[EUR][1000 genomes]
rs28842324	0.92[EUR][1000 genomes]
rs28880017	0.92[EUR][1000 genomes]
rs28896477	0.92[EUR][1000 genomes]
rs2941509	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3169572	1.00[CEU][hapmap]
rs34016964	0.92[EUR][1000 genomes]
rs34053394	0.92[EUR][1000 genomes]
rs34291217	0.92[EUR][1000 genomes]
rs34344462	0.92[EUR][1000 genomes]
rs34485135	0.92[EUR][1000 genomes]
rs34518282	0.92[EUR][1000 genomes]
rs34582264	0.81[EUR][1000 genomes]
rs34599546	0.92[EUR][1000 genomes]
rs34640000	0.92[EUR][1000 genomes]
rs34654193	0.92[EUR][1000 genomes]
rs34758895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34864615	0.89[EUR][1000 genomes]
rs34925681	0.92[EUR][1000 genomes]
rs34988504	0.92[EUR][1000 genomes]
rs35088469	0.92[EUR][1000 genomes]
rs35105110	0.92[EUR][1000 genomes]
rs35130019	0.89[EUR][1000 genomes]
rs35352075	0.92[EUR][1000 genomes]
rs35397078	0.81[EUR][1000 genomes]
rs35405174	0.92[EUR][1000 genomes]
rs35506518	0.92[EUR][1000 genomes]
rs35938199	0.92[EUR][1000 genomes]
rs36097841	0.92[EUR][1000 genomes]
rs4337325	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4622539	0.92[EUR][1000 genomes]
rs56928975	0.89[EUR][1000 genomes]
rs58075375	0.92[EUR][1000 genomes]
rs66763967	0.92[EUR][1000 genomes]
rs67135646	0.92[EUR][1000 genomes]
rs67571561	0.92[EUR][1000 genomes]
rs67600807	0.92[EUR][1000 genomes]
rs67605703	0.92[EUR][1000 genomes]
rs71369788	0.92[EUR][1000 genomes]
rs71369791	0.92[EUR][1000 genomes]
rs71369792	0.92[EUR][1000 genomes]
rs7211998	0.92[EUR][1000 genomes]
rs7217133	0.92[EUR][1000 genomes]
rs7224641	0.92[EUR][1000 genomes]
rs73302152	0.92[EUR][1000 genomes]
rs73304123	0.92[EUR][1000 genomes]
rs7503018	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8067523	0.92[EUR][1000 genomes]
rs8068125	0.92[EUR][1000 genomes]
rs8068894	0.92[EUR][1000 genomes]
rs8069531	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8069893	0.92[EUR][1000 genomes]
rs8072612	0.92[EUR][1000 genomes]
rs8076347	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8078409	0.81[EUR][1000 genomes]
rs8079075	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9652838	0.89[EUR][1000 genomes]
rs9652840	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9891131	0.95[AMR][1000 genomes]
rs9892781	0.92[EUR][1000 genomes]
rs9894680	0.92[EUR][1000 genomes]
rs9894898	0.92[EUR][1000 genomes]
rs9898031	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9898464	0.92[EUR][1000 genomes]
rs9899006	0.92[EUR][1000 genomes]
rs9899336	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9899345	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9900019	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9900538	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9900541	0.92[EUR][1000 genomes]
rs9901483	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9901617	0.92[EUR][1000 genomes]
rs9901917	0.89[EUR][1000 genomes]
rs9902621	0.92[EUR][1000 genomes]
rs9904277	0.92[EUR][1000 genomes]
rs9904834	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9905881	0.92[EUR][1000 genomes]
rs9907096	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9907291	0.92[EUR][1000 genomes]
rs9907564	0.92[EUR][1000 genomes]
rs9907794	0.92[EUR][1000 genomes]
rs9907966	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9907988	0.89[EUR][1000 genomes]
rs9908694	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9908983	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9909365	0.92[EUR][1000 genomes]
rs9909432	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9910678	0.95[AMR][1000 genomes]
rs9911069	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9911634	0.92[EUR][1000 genomes]
rs9911669	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9911688	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9912095	0.92[EUR][1000 genomes]
rs9913044	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9913596	0.92[EUR][1000 genomes]
rs9913769	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9913795	0.92[EUR][1000 genomes]
rs9913957	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9914302	0.92[EUR][1000 genomes]
rs9914516	1.00[CEU][hapmap]
rs9914665	0.92[EUR][1000 genomes]
rs9914757	0.89[EUR][1000 genomes]
rs9915509	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9915797	0.85[EUR][1000 genomes]
rs9916259	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37912000-37930400	Weak transcription	Esophagus	oesophagus
2	chr17:37912800-37927400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:37913600-37926400	Genic enhancers	Fetal Thymus	thymus
4	chr17:37918400-37929400	Weak transcription	Colonic Mucosa	Colon
5	chr17:37920000-37930000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr17:37920800-37931000	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr17:37921000-37926600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:37921200-37926200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
9	chr17:37922200-37926800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:37922600-37926200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:37922600-37928400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr17:37922800-37926200	Genic enhancers	Primary T cells from cord blood	blood
13	chr17:37922800-37926600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr17:37923000-37928600	Genic enhancers	Primary B cells from cord blood	blood
15	chr17:37923200-37929200	Weak transcription	Spleen	Spleen
16	chr17:37924200-37928600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr17:37924400-37929000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
18	chr17:37924600-37929600	Enhancers	Duodenum Mucosa	Duodenum
19	chr17:37925400-37926200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr17:37925400-37926400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr17:37925400-37927600	Enhancers	Hela-S3	cervix
22	chr17:37925400-37929600	Enhancers	Dnd41	blood
23	chr17:37925600-37927000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:37925600-37927000	Enhancers	HepG2	liver
25	chr17:37925600-37927200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr17:37925600-37927400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr17:37925600-37927400	Enhancers	HMEC	breast
28	chr17:37925600-37928800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr17:37925600-37938400	Weak transcription	Pancreas	Pancrea
30	chr17:37925800-37927000	Flanking Active TSS	Thymus	Thymus
31	chr17:37925800-37927400	Enhancers	NHEK	skin
32	chr17:37925800-37928200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr17:37926000-37926400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
34	chr17:37926000-37926400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr17:37926000-37926600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr17:37926000-37926600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr17:37926000-37927400	Enhancers	Placenta Amnion	Placenta Amnion

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