Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr17:34083288-34083653	GM12878	blood:	n/a	n/a
2	SPI1	chr17:34083206-34083662	HL-60	blood:	n/a	n/a
3	ZNF384	chr17:34083378-34083637	K562	blood:	n/a	n/a
4	SPI1	chr17:34083263-34083611	GM12878	blood:	n/a	n/a
5	SPI1	chr17:34083281-34083554	GM12891	blood:	n/a	n/a
6	SPI1	chr17:34083368-34083499	K562	blood:	n/a	n/a
7	PAX5	chr17:34083450-34083801	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34082858..34085086-chr17:34087273..34089011,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10451309	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs1065341	0.87[TSI][hapmap]
rs16963927	0.87[TSI][hapmap]
rs16971600	0.87[TSI][hapmap]
rs16971624	0.87[TSI][hapmap]
rs4251704	0.85[CHD][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs4251710	0.85[CHD][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs4251776	0.87[TSI][hapmap]
rs55680144	0.87[ASN][1000 genomes]
rs55906604	0.87[ASN][1000 genomes]
rs55951822	0.85[ASN][1000 genomes]
rs56077005	0.90[ASN][1000 genomes]
rs60040900	0.91[EUR][1000 genomes]
rs8073456	0.87[TSI][hapmap]
rs9674851	0.87[ASW][hapmap];0.98[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9895464	0.92[YRI][hapmap]
rs9898128	0.92[YRI][hapmap]
rs9901469	0.91[EUR][1000 genomes]
rs9907320	0.91[EUR][1000 genomes]
rs9914929	0.81[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9896368	CCL5	cis	lymphoblastoid	seeQTL
rs9896368	RDM1	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34080600-34087400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr17:34083000-34083600	Enhancers	GM12878-XiMat	blood
3	chr17:34083200-34083800	Enhancers	Primary B cells from peripheral blood	blood
4	chr17:34083200-34091000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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