Variant report

Variant	rs9897663
Chromosome Location	chr17:33872257-33872258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1470312	0.86[AMR][1000 genomes]
rs16971207	0.89[JPT][hapmap]
rs59682742	0.85[EUR][1000 genomes]
rs7210755	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7210888	0.92[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7223822	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8073060	0.89[JPT][hapmap]
rs874722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901285	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33869000-33872600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr17:33869000-33873200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr17:33869800-33877200	Weak transcription	Lung	lung
4	chr17:33870400-33881000	Weak transcription	K562	blood
5	chr17:33870400-33888600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:33870600-33873200	Weak transcription	GM12878-XiMat	blood
7	chr17:33870800-33873200	Weak transcription	Primary B cells from cord blood	blood
8	chr17:33871000-33872800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:33871000-33873200	Weak transcription	Adipose Nuclei	Adipose
10	chr17:33871000-33873400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr17:33871400-33873200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr17:33871600-33873600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:33871600-33873800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr17:33872200-33872600	Enhancers	A549	lung
15	chr17:33872200-33872800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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