Variant report

Variant	rs9909044
Chromosome Location	chr17:16528683-16528684
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1005369	1.00[ASN][1000 genomes]
rs1005370	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12051673	0.96[ASN][1000 genomes]
rs12051751	0.88[EUR][1000 genomes]
rs12103873	0.84[ASN][1000 genomes]
rs16959857	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959869	1.00[ASN][1000 genomes]
rs16959870	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431824	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28458310	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28458353	0.98[ASN][1000 genomes]
rs28525101	0.81[ASN][1000 genomes]
rs28525658	0.95[ASN][1000 genomes]
rs28526077	0.88[ASN][1000 genomes]
rs28612609	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28626982	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28636605	0.95[ASN][1000 genomes]
rs28674185	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28751872	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28754336	0.98[ASN][1000 genomes]
rs28792801	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28826699	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865976	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28875211	1.00[ASN][1000 genomes]
rs3813762	1.00[ASN][1000 genomes]
rs4239135	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4352086	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4791672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4791673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4791676	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4791678	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4792757	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4792760	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4792761	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4792762	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5000166	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55920274	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56303920	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57305125	0.95[EUR][1000 genomes]
rs57448521	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57694811	0.95[EUR][1000 genomes]
rs58164310	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59486407	0.98[ASN][1000 genomes]
rs59594997	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59826203	1.00[ASN][1000 genomes]
rs62072781	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072790	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62072792	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072845	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62073660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208075	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213274	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7217544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217717	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218241	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7219632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221518	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7222622	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7222875	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7225641	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7226328	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72637355	0.95[ASN][1000 genomes]
rs72637356	1.00[ASN][1000 genomes]
rs72637357	1.00[ASN][1000 genomes]
rs72637358	1.00[ASN][1000 genomes]
rs72637359	0.98[ASN][1000 genomes]
rs72637360	0.98[ASN][1000 genomes]
rs72637361	0.85[ASN][1000 genomes]
rs72637362	0.87[ASN][1000 genomes]
rs72637363	0.83[ASN][1000 genomes]
rs8065558	1.00[ASN][1000 genomes]
rs8068349	0.98[ASN][1000 genomes]
rs8069286	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8074285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074464	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074487	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8075988	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8076849	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8082225	0.98[ASN][1000 genomes]
rs8082323	0.95[EUR][1000 genomes]
rs8082462	0.95[EUR][1000 genomes]
rs8082650	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9889227	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9890123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9890698	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9892170	0.85[EUR][1000 genomes]
rs9894637	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898888	0.87[ASN][1000 genomes]
rs9899785	0.98[ASN][1000 genomes]
rs9899919	0.98[ASN][1000 genomes]
rs9901145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9904901	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9905710	0.97[ASN][1000 genomes]
rs9906261	1.00[ASN][1000 genomes]
rs9906728	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9907785	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908015	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9908390	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9909955	0.99[ASN][1000 genomes]
rs9910087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910842	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9911162	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9911524	0.98[ASN][1000 genomes]
rs9911608	0.98[ASN][1000 genomes]
rs9911677	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9911820	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9911851	1.00[ASN][1000 genomes]
rs9915121	0.84[ASN][1000 genomes]
rs9916069	0.98[ASN][1000 genomes]
rs9916258	0.98[ASN][1000 genomes]
rs9916819	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	esv2758442	chr17:16527056-16817437	Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2758676	chr17:16527056-16817437	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv427991	chr17:16527056-16817437	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16519800-16540000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr17:16520600-16533400	ZNF genes & repeats	Liver	Liver
3	chr17:16521200-16534200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr17:16522000-16540000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:16522600-16529000	ZNF genes & repeats	Primary T cells from cord blood	blood
6	chr17:16522800-16528800	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr17:16523000-16540400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:16523200-16532200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
9	chr17:16523200-16532200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:16523400-16534000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:16523400-16534000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr17:16523400-16537000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr17:16523400-16538400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr17:16524600-16539400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:16524800-16533400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr17:16525000-16530800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr17:16525600-16529000	ZNF genes & repeats	Fetal Lung	lung
18	chr17:16525600-16530800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:16525600-16533400	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr17:16525800-16528800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:16525800-16528800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr17:16525800-16528800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
23	chr17:16525800-16529400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
24	chr17:16525800-16530000	ZNF genes & repeats	Left Ventricle	heart
25	chr17:16525800-16530200	ZNF genes & repeats	Ovary	ovary
26	chr17:16525800-16530200	ZNF genes & repeats	Dnd41	blood
27	chr17:16525800-16531200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
28	chr17:16525800-16531200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr17:16525800-16531400	ZNF genes & repeats	Fetal Intestine Large	intestine
30	chr17:16525800-16532200	ZNF genes & repeats	A549	lung
31	chr17:16525800-16538200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr17:16525800-16538400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
33	chr17:16525800-16539800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr17:16526000-16530200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr17:16526000-16531600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr17:16526200-16531200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr17:16526200-16533400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
38	chr17:16526200-16533600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
39	chr17:16526400-16528800	ZNF genes & repeats	Thymus	Thymus
40	chr17:16526600-16533200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
41	chr17:16526600-16533800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
42	chr17:16526800-16528800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr17:16526800-16530200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr17:16526800-16530400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr17:16526800-16530400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
46	chr17:16526800-16531400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
47	chr17:16526800-16532200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
48	chr17:16527000-16530400	ZNF genes & repeats	Placenta	Placenta
49	chr17:16527200-16542200	Weak transcription	Fetal Heart	heart
50	chr17:16527400-16528800	ZNF genes & repeats	Stomach Mucosa	stomach

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