Variant report

Variant	rs9909921
Chromosome Location	chr17:16500102-16500103
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16471456..16473780-chr17:16498395..16500640,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141040	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11868291	1.00[EUR][1000 genomes]
rs11870650	0.96[EUR][1000 genomes]
rs2058197	0.91[EUR][1000 genomes]
rs28419755	0.95[EUR][1000 genomes]
rs28704561	0.95[EUR][1000 genomes]
rs59771043	0.98[EUR][1000 genomes]
rs62072767	0.96[EUR][1000 genomes]
rs62072768	0.95[EUR][1000 genomes]
rs62072769	0.96[EUR][1000 genomes]
rs62072771	0.98[EUR][1000 genomes]
rs62072772	0.82[EUR][1000 genomes]
rs62072776	1.00[EUR][1000 genomes]
rs62072777	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62072778	1.00[EUR][1000 genomes]
rs62072782	0.88[EUR][1000 genomes]
rs62072783	0.88[EUR][1000 genomes]
rs62072785	0.88[EUR][1000 genomes]
rs62072786	0.88[EUR][1000 genomes]
rs62072787	0.88[EUR][1000 genomes]
rs62072789	0.88[EUR][1000 genomes]
rs62072791	0.88[EUR][1000 genomes]
rs62072846	0.88[EUR][1000 genomes]
rs62072847	0.88[EUR][1000 genomes]
rs62072856	0.88[EUR][1000 genomes]
rs62072857	0.88[EUR][1000 genomes]
rs62072858	0.88[EUR][1000 genomes]
rs62072859	0.88[EUR][1000 genomes]
rs62073662	0.88[EUR][1000 genomes]
rs62073663	0.88[EUR][1000 genomes]
rs62073665	0.88[EUR][1000 genomes]
rs62073667	0.88[EUR][1000 genomes]
rs62073702	0.88[EUR][1000 genomes]
rs62073703	0.88[EUR][1000 genomes]
rs62073705	0.88[EUR][1000 genomes]
rs62073706	0.88[EUR][1000 genomes]
rs62073707	0.88[EUR][1000 genomes]
rs62073708	0.88[EUR][1000 genomes]
rs62073709	0.86[EUR][1000 genomes]
rs62073710	0.88[EUR][1000 genomes]
rs7218473	0.95[EUR][1000 genomes]
rs7224237	0.88[EUR][1000 genomes]
rs73982008	0.98[EUR][1000 genomes]
rs8065062	0.98[EUR][1000 genomes]
rs8065749	0.93[EUR][1000 genomes]
rs9899944	0.95[EUR][1000 genomes]
rs9902115	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909271	1.00[CEU][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9910496	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16498800-16502400	Weak transcription	Fetal Intestine Small	intestine

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