Variant report

Variant	rs9910496
Chromosome Location	chr17:16491156-16491157
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11868291	0.95[EUR][1000 genomes]
rs11870650	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11870734	1.00[ASN][1000 genomes]
rs16959837	1.00[ASN][1000 genomes]
rs2058197	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28419755	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704561	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57240543	1.00[ASN][1000 genomes]
rs59771043	0.96[EUR][1000 genomes]
rs60644317	1.00[ASN][1000 genomes]
rs62072767	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62072768	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62072769	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072771	0.96[EUR][1000 genomes]
rs62072772	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62072773	0.87[ASN][1000 genomes]
rs62072776	0.95[EUR][1000 genomes]
rs62072777	0.95[EUR][1000 genomes]
rs62072778	0.95[EUR][1000 genomes]
rs62072782	0.83[EUR][1000 genomes]
rs62072783	0.83[EUR][1000 genomes]
rs62072785	0.83[EUR][1000 genomes]
rs62072786	0.83[EUR][1000 genomes]
rs62072787	0.83[EUR][1000 genomes]
rs62072789	0.83[EUR][1000 genomes]
rs62072791	0.83[EUR][1000 genomes]
rs62072846	0.83[EUR][1000 genomes]
rs62072847	0.83[EUR][1000 genomes]
rs62072856	0.83[EUR][1000 genomes]
rs62072857	0.83[EUR][1000 genomes]
rs62072858	0.83[EUR][1000 genomes]
rs62072859	0.83[EUR][1000 genomes]
rs62073662	0.83[EUR][1000 genomes]
rs62073663	0.83[EUR][1000 genomes]
rs62073665	0.83[EUR][1000 genomes]
rs62073667	0.83[EUR][1000 genomes]
rs62073702	0.83[EUR][1000 genomes]
rs62073703	0.83[EUR][1000 genomes]
rs62073705	0.83[EUR][1000 genomes]
rs62073706	0.83[EUR][1000 genomes]
rs62073707	0.83[EUR][1000 genomes]
rs62073708	0.83[EUR][1000 genomes]
rs62073709	0.81[EUR][1000 genomes]
rs62073710	0.83[EUR][1000 genomes]
rs7218473	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224237	0.83[EUR][1000 genomes]
rs73982008	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8065062	0.96[EUR][1000 genomes]
rs8065749	0.91[EUR][1000 genomes]
rs9899944	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9902115	0.95[EUR][1000 genomes]
rs9909271	0.95[EUR][1000 genomes]
rs9909921	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv960425	chr17:16490660-16491873	Weak transcription Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16488200-16491800	Weak transcription	Pancreas	Pancrea
2	chr17:16488200-16492000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr17:16488200-16492000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr17:16488200-16492000	Weak transcription	Liver	Liver
5	chr17:16488200-16492000	Weak transcription	Brain Anterior Caudate	brain
6	chr17:16488200-16492000	Weak transcription	Brain Hippocampus Middle	brain
7	chr17:16488200-16492000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr17:16488200-16492000	Weak transcription	Brain Substantia Nigra	brain
9	chr17:16488200-16492000	Weak transcription	Colon Smooth Muscle	Colon
10	chr17:16488200-16492000	Weak transcription	Psoas Muscle	Psoas
11	chr17:16488200-16492000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr17:16488200-16492000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr17:16488200-16492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr17:16488200-16492200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:16488200-16492200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr17:16488200-16492200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:16488200-16492200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:16488200-16492200	Weak transcription	Placenta	Placenta
19	chr17:16488200-16492200	Weak transcription	Left Ventricle	heart
20	chr17:16488200-16492200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr17:16488200-16492200	Weak transcription	Right Ventricle	heart
22	chr17:16488200-16492200	Weak transcription	HMEC	breast
23	chr17:16488400-16492000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:16488400-16492000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr17:16489200-16492200	Weak transcription	Lung	lung
26	chr17:16489600-16492000	Weak transcription	Adipose Nuclei	Adipose

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