Variant report

Variant	rs9918494
Chromosome Location	chr7:104681649-104681650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104621330..104622455-chr7:104680668..104682176,5	MCF-7	breast:
2	chr7:104674502..104677461-chr7:104680943..104682648,2	K562	blood:
3	chr7:104679059..104683301-chr7:104684929..104688094,8	K562	blood:
4	chr7:104563436..104563948-chr7:104681191..104681853,2	MCF-7	breast:
5	chr7:104680385..104683301-chr7:104683670..104687526,4	K562	blood:
6	chr7:104675440..104678046-chr7:104679888..104682253,3	MCF-7	breast:
7	chr7:104681412..104683370-chr7:104729385..104731590,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1010340	0.81[CEU][hapmap]
rs1011468	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10228174	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10247691	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10252714	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10263499	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1029596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11978288	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11981882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12534212	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12705296	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1558048	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17640472	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs17640508	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17707802	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2074753	0.85[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs2097942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2106500	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299298	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299305	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299309	0.85[CEU][hapmap]
rs4602821	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727618	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56016333	1.00[ASN][1000 genomes]
rs6466035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66905828	0.82[ASN][1000 genomes]
rs67665940	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68004394	0.80[EUR][1000 genomes]
rs6947388	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6949073	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6950104	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6950894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6963395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6967753	0.80[EUR][1000 genomes]
rs6972563	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6974874	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6976394	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6980244	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7784126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7794036	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7794285	0.93[CEU][hapmap]
rs7796945	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs888086	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104656600-104681800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:104658600-104703800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:104658800-104681800	Weak transcription	Thymus	Thymus
4	chr7:104661800-104696000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:104665600-104682200	Weak transcription	HMEC	breast
6	chr7:104665600-104682200	Weak transcription	HSMMtube	muscle
7	chr7:104668200-104685000	Weak transcription	HUVEC	blood vessel
8	chr7:104669600-104685000	Weak transcription	Esophagus	oesophagus
9	chr7:104670400-104684400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:104670400-104685000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:104671800-104681800	Weak transcription	Pancreas	Pancrea
12	chr7:104671800-104685000	Weak transcription	Aorta	Aorta
13	chr7:104673000-104685000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:104674800-104685000	Weak transcription	Right Ventricle	heart
15	chr7:104675000-104681800	Weak transcription	Fetal Intestine Large	intestine
16	chr7:104675000-104682000	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:104675000-104684800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:104675000-104694200	Weak transcription	Spleen	Spleen
19	chr7:104675000-104694800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:104676200-104684800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:104676400-104687400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:104677000-104681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:104677000-104682200	Weak transcription	Brain Germinal Matrix	brain
24	chr7:104677000-104682400	Weak transcription	Fetal Brain Male	brain
25	chr7:104677200-104681800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:104677200-104682400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:104677800-104682000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr7:104677800-104758200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:104678000-104682400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr7:104678000-104812200	Strong transcription	Dnd41	blood
31	chr7:104678200-104684200	Strong transcription	K562	blood
32	chr7:104678200-104688400	Weak transcription	Gastric	stomach
33	chr7:104678400-104685000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr7:104678400-104686800	Strong transcription	HSMM	muscle
35	chr7:104678600-104682600	Weak transcription	NHDF-Ad	bronchial
36	chr7:104678800-104685000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:104679000-104681800	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr7:104679200-104681800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr7:104679200-104681800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr7:104679200-104681800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr7:104679200-104682600	Enhancers	Brain Substantia Nigra	brain
42	chr7:104679200-104683600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
43	chr7:104679200-104684600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:104679600-104682200	Weak transcription	Fetal Kidney	kidney
45	chr7:104679600-104695800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:104679800-104681800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:104679800-104682600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr7:104679800-104684800	Weak transcription	Small Intestine	intestine
49	chr7:104680000-104681800	Weak transcription	Fetal Brain Female	brain
50	chr7:104680000-104685000	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links