Variant report

Variant	rs9919209
Chromosome Location	chr1:225292384-225292385
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1080260	0.81[AMR][1000 genomes]
rs10915779	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1506071	0.83[AMR][1000 genomes]
rs1506074	0.83[AMR][1000 genomes]
rs2449256	0.83[AMR][1000 genomes]
rs2449258	0.83[AMR][1000 genomes]
rs2449281	0.83[AMR][1000 genomes]
rs2449304	0.83[AMR][1000 genomes]
rs2449322	0.83[AMR][1000 genomes]
rs2456336	0.83[AMR][1000 genomes]
rs2456349	0.83[AMR][1000 genomes]
rs2489298	0.83[AMR][1000 genomes]
rs2489301	0.83[AMR][1000 genomes]
rs2489327	0.80[AMR][1000 genomes]
rs2489343	0.83[AMR][1000 genomes]
rs2489346	0.83[AMR][1000 genomes]
rs2489348	0.83[AMR][1000 genomes]
rs2489352	0.83[AMR][1000 genomes]
rs2501100	0.83[AMR][1000 genomes]
rs2501101	0.83[AMR][1000 genomes]
rs2501133	0.80[AMR][1000 genomes]
rs2939363	0.83[AMR][1000 genomes]
rs3101904	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3101910	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3101913	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3101916	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3101917	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3102106	0.81[AMR][1000 genomes]
rs3102115	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3105564	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3105572	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3120989	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3120993	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3128654	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3128655	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3128657	0.81[EUR][1000 genomes]
rs3128666	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128667	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61211002	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6426051	0.80[EUR][1000 genomes]
rs6683938	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6689915	0.80[EUR][1000 genomes]
rs6697382	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6702733	0.80[EUR][1000 genomes]
rs7521702	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7545060	0.81[ASN][1000 genomes]
rs7548138	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9663018	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225275600-225312600	Weak transcription	Ovary	ovary

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