Variant report

Variant	rs992169
Chromosome Location	chr7:126608817-126608818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1003036	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1008274	0.85[CHB][hapmap]
rs1010517	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs10234281	0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10236120	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs10236204	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs10236227	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10265258	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10275501	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10487463	0.85[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs1121874	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11496163	0.87[ASN][1000 genomes]
rs1154324	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1154325	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1155597	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1155656	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11563513	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs11563801	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs1204563	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204567	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1204569	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1204579	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1204583	0.83[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1204588	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1204593	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204594	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1211384	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12164089	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1361965	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1361968	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1361975	0.82[ASN][1000 genomes]
rs1419438	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs1419465	0.83[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1419468	0.86[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs1419469	0.88[ASN][1000 genomes]
rs1419470	0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1419471	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs1548766	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1582255	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs1833069	0.82[EUR][1000 genomes]
rs2022072	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2067052	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2072416	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2106188	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2188188	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs2215565	0.84[EUR][1000 genomes]
rs2237774	0.85[EUR][1000 genomes]
rs2237776	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2518949	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs2518954	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518955	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2535926	0.83[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2535932	0.83[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs2535933	0.80[CHB][hapmap]
rs2535934	0.84[EUR][1000 genomes]
rs2535936	0.84[EUR][1000 genomes]
rs2535938	0.83[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes]
rs2535939	0.85[CHB][hapmap]
rs2535943	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2535944	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3808136	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs3808142	0.90[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs4728057	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs4728060	0.86[CHB][hapmap]
rs6950713	0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs6975379	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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