Variant report

Variant	rs9925607
Chromosome Location	chr16:80197764-80197765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12103219	0.82[AFR][1000 genomes]
rs13330290	0.91[AFR][1000 genomes]
rs16952535	0.83[YRI][hapmap]
rs2045928	0.91[AFR][1000 genomes]
rs28396536	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80193200-80199600	Weak transcription	A549	lung
2	chr16:80193400-80197800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:80193400-80197800	Weak transcription	Osteobl	bone
4	chr16:80193400-80199200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:80193600-80197800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr16:80193600-80201400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:80193600-80207600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr16:80193800-80201400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:80197000-80200800	Weak transcription	Fetal Kidney	kidney
10	chr16:80197400-80198400	Enhancers	HSMM	muscle
11	chr16:80197600-80198000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr16:80197600-80198000	Enhancers	Pancreas	Pancrea
13	chr16:80197600-80198000	Enhancers	NH-A	brain
14	chr16:80197600-80198400	Enhancers	HSMMtube	muscle
15	chr16:80197600-80198600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links