Variant report

Variant	rs9927166
Chromosome Location	chr16:80233126-80233127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80217075..80218900-chr16:80231657..80233649,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11150251	1.00[AMR][1000 genomes]
rs12934434	1.00[AMR][1000 genomes]
rs13330157	0.80[AFR][1000 genomes]
rs13330289	1.00[AMR][1000 genomes]
rs13330955	1.00[AMR][1000 genomes]
rs13331960	1.00[AMR][1000 genomes]
rs13339027	1.00[AMR][1000 genomes]
rs28630847	1.00[AMR][1000 genomes]
rs28829271	1.00[AMR][1000 genomes]
rs57172347	1.00[AMR][1000 genomes]
rs57630839	1.00[AMR][1000 genomes]
rs58089953	1.00[AMR][1000 genomes]
rs58986982	1.00[AMR][1000 genomes]
rs60957378	1.00[AMR][1000 genomes]
rs6564746	1.00[AMR][1000 genomes]
rs6564747	1.00[AMR][1000 genomes]
rs7204613	1.00[AMR][1000 genomes]
rs73573837	1.00[AMR][1000 genomes]
rs73573839	1.00[AMR][1000 genomes]
rs73573843	1.00[AMR][1000 genomes]
rs73573879	1.00[AMR][1000 genomes]
rs73577625	0.90[AFR][1000 genomes]
rs73577643	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579646	1.00[AMR][1000 genomes]
rs73579647	1.00[AMR][1000 genomes]
rs73579651	1.00[AMR][1000 genomes]
rs73579655	1.00[AMR][1000 genomes]
rs74028409	1.00[AMR][1000 genomes]
rs74028410	1.00[AMR][1000 genomes]
rs74030061	1.00[AMR][1000 genomes]
rs8061220	1.00[AMR][1000 genomes]
rs9889095	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921104	1.00[AMR][1000 genomes]
rs9922244	1.00[AMR][1000 genomes]
rs9922479	1.00[AMR][1000 genomes]
rs9925651	1.00[AMR][1000 genomes]
rs9926298	1.00[AMR][1000 genomes]
rs9927513	1.00[AMR][1000 genomes]
rs9928544	1.00[AMR][1000 genomes]
rs9931668	1.00[AMR][1000 genomes]
rs9934444	1.00[AMR][1000 genomes]
rs9938466	1.00[AMR][1000 genomes]
rs9938741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055228	chr16:80207546-80378842	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1064093	chr16:80208443-80333301	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv542985	chr16:80208443-80333301	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1059997	chr16:80209367-80247050	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1063466	chr16:80227628-80360463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv906996	chr16:80230224-80334010	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80231400-80233200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:80231400-80233200	Flanking Active TSS	A549	lung
3	chr16:80231400-80233200	Enhancers	HSMM	muscle
4	chr16:80231400-80233200	Enhancers	HUVEC	blood vessel
5	chr16:80231400-80233200	Enhancers	NHDF-Ad	bronchial
6	chr16:80231400-80233400	Enhancers	Osteobl	bone
7	chr16:80231400-80233600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr16:80231600-80233200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr16:80231600-80233200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr16:80231600-80233200	Enhancers	Fetal Lung	lung
11	chr16:80231600-80233200	Enhancers	HepG2	liver
12	chr16:80232000-80233400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:80232000-80237000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr16:80232200-80233200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr16:80232200-80233400	Enhancers	HMEC	breast
16	chr16:80232400-80233200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr16:80232400-80233200	Bivalent/Poised TSS	Fetal Brain Male	brain
18	chr16:80232400-80233200	Enhancers	NHLF	lung
19	chr16:80232400-80233400	Enhancers	NHEK	skin

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