Variant report

Variant	rs9934120
Chromosome Location	chr16:12253774-12253775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:12253223..12255934-chr16:12258590..12260441,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11642667	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1701111	0.90[AMR][1000 genomes]
rs1704094	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1704130	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2456272	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2968353	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs709418	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs709419	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs709420	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs709421	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs709422	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8062913	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs830696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs830698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs830700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs830701	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs830704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs830705	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs830706	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs830707	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs830708	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs830709	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs830710	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs830724	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs830725	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs844224	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844225	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs853869	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs853870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs862692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs865533	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs866180	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs905952	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs937965	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1043959	chr16:12039346-12285269	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1052973	chr16:12188092-12307880	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1042146	chr16:12208242-12256699	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1039590	chr16:12237623-12279574	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12213800-12255400	Weak transcription	Gastric	stomach
2	chr16:12230200-12256200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr16:12231400-12268000	Weak transcription	Pancreas	Pancrea
4	chr16:12234600-12261600	Weak transcription	Aorta	Aorta
5	chr16:12234600-12265600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:12242200-12253800	Weak transcription	Right Atrium	heart
7	chr16:12242200-12255200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr16:12242200-12261600	Weak transcription	Lung	lung
9	chr16:12242200-12262800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr16:12242200-12299400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr16:12242400-12255800	Weak transcription	Thymus	Thymus
12	chr16:12242400-12256400	Weak transcription	Fetal Kidney	kidney
13	chr16:12242400-12264600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr16:12242400-12280600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr16:12243200-12255400	Weak transcription	Psoas Muscle	Psoas
16	chr16:12244400-12255800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr16:12244800-12261200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr16:12245600-12257200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr16:12245600-12261800	Weak transcription	Fetal Thymus	thymus
20	chr16:12247400-12259400	Strong transcription	Primary B cells from cord blood	blood
21	chr16:12248000-12258400	Strong transcription	Primary B cells from peripheral blood	blood
22	chr16:12248200-12255200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr16:12248800-12254000	Strong transcription	Adipose Nuclei	Adipose
24	chr16:12248800-12257800	Strong transcription	Primary T cells from cord blood	blood
25	chr16:12249600-12254000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr16:12249600-12256400	Weak transcription	HepG2	liver
27	chr16:12250000-12257000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr16:12250000-12260800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr16:12250600-12254000	Enhancers	HSMM	muscle
30	chr16:12251000-12255000	Enhancers	NH-A	brain
31	chr16:12251000-12255000	Enhancers	Osteobl	bone
32	chr16:12251000-12260800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr16:12251200-12254200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr16:12251200-12255000	Weak transcription	Spleen	Spleen
35	chr16:12251400-12255200	Weak transcription	Placenta	Placenta
36	chr16:12251800-12261600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr16:12251800-12264000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:12252000-12255800	Weak transcription	NHLF	lung
39	chr16:12252000-12264200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr16:12252200-12256400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr16:12252400-12254000	Enhancers	Fetal Heart	heart
42	chr16:12252400-12254200	Enhancers	Brain Angular Gyrus	brain
43	chr16:12252400-12256600	Enhancers	Left Ventricle	heart
44	chr16:12252600-12253800	Weak transcription	Fetal Brain Male	brain
45	chr16:12252600-12254200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr16:12252800-12253800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr16:12252800-12253800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr16:12252800-12254200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr16:12252800-12254200	Enhancers	Fetal Muscle Leg	muscle
50	chr16:12252800-12256600	Weak transcription	Fetal Muscle Trunk	muscle

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