Variant report

Variant	rs9936302
Chromosome Location	chr16:81190790-81190791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81189500..81193417-chr16:81196908..81199749,3	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1075489	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11649028	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12102293	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12102691	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12102728	0.90[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12102958	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12103301	0.90[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12103303	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12103358	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12103403	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12716908	0.90[EUR][1000 genomes]
rs13339033	0.85[EUR][1000 genomes]
rs13339333	0.85[EUR][1000 genomes]
rs1453324	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1806876	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2317119	0.90[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2317123	0.90[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28395434	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28514797	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28697180	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28709482	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2873367	0.90[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2873368	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28757743	0.90[EUR][1000 genomes]
rs34110030	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34242559	0.82[EUR][1000 genomes]
rs34444956	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35066366	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35326835	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35424543	0.82[EUR][1000 genomes]
rs35769936	0.82[EUR][1000 genomes]
rs4365300	0.90[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55788414	0.82[EUR][1000 genomes]
rs55819896	0.85[EUR][1000 genomes]
rs56134462	0.84[EUR][1000 genomes]
rs57461213	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59201365	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67345347	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7184704	0.84[EUR][1000 genomes]
rs7185658	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs729265	0.90[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7499792	0.90[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8043592	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8048115	0.89[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8059559	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9921666	0.90[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9921748	0.90[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9921827	0.90[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9929059	0.90[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9929066	0.90[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9929253	0.90[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9940095	0.90[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9940186	0.90[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv2751615	chr16:81093099-81307599	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv530715	chr16:81117168-81252875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv907005	chr16:81121353-81194912	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv978328	chr16:81166830-81197232	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv960376	chr16:81170217-81214783	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv1064742	chr16:81172662-81266841	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
10	nsv431520	chr16:81172699-81258899	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
11	nsv457570	chr16:81173030-81264597	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
12	nsv573348	chr16:81173030-81264597	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
13	nsv1056584	chr16:81177693-81266841	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
14	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
15	nsv1059877	chr16:81178596-81266841	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
16	nsv1064021	chr16:81181006-81266841	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
17	nsv521055	chr16:81181423-81264597	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
18	nsv1066686	chr16:81186889-81223646	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
19	nsv916050	chr16:81187125-81262282	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
20	nsv907008	chr16:81187852-81208175	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	nsv457571	chr16:81189510-81233614	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
22	nsv573352	chr16:81189510-81233614	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
23	nsv907009	chr16:81190790-81262516	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81154000-81198800	Weak transcription	Right Ventricle	heart
2	chr16:81171200-81193400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr16:81171200-81206400	Weak transcription	Ovary	ovary
4	chr16:81171600-81192600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:81175400-81201600	Weak transcription	Left Ventricle	heart
6	chr16:81185600-81193200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr16:81186000-81191400	Weak transcription	Brain Angular Gyrus	brain
8	chr16:81186000-81191400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr16:81186000-81193200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:81186200-81191200	Weak transcription	Brain Substantia Nigra	brain
11	chr16:81188000-81193000	Weak transcription	Adipose Nuclei	Adipose
12	chr16:81188000-81209000	Weak transcription	Right Atrium	heart
13	chr16:81189400-81190800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr16:81190600-81192000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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