Variant report

Variant	rs9942625
Chromosome Location	chr7:124806217-124806218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1020629	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10240611	0.94[ASN][1000 genomes]
rs10256073	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10266152	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs1031952	0.86[CHB][hapmap]
rs10500102	0.93[CHB][hapmap]
rs10954061	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs11761435	0.86[CHB][hapmap]
rs11771079	0.93[CHB][hapmap]
rs1248737	0.92[CHB][hapmap]
rs12531708	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12534920	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12535063	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12539545	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1357971	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1404897	0.86[CHB][hapmap]
rs1454124	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1471570	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1525620	0.88[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap]
rs1552116	0.93[CHB][hapmap]
rs1552117	0.93[CHB][hapmap]
rs17147889	0.86[CHB][hapmap]
rs17148021	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17148035	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28402853	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2929322	0.86[CHB][hapmap]
rs34246481	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs34974782	0.92[ASN][1000 genomes]
rs3847093	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58160159	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60486828	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs612391	0.93[CHB][hapmap]
rs627823	0.92[CHB][hapmap]
rs6466995	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs650653	0.93[CHB][hapmap]
rs651988	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs659269	0.82[ASN][1000 genomes]
rs663056	0.93[CHB][hapmap]
rs664062	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs6947036	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6954295	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6955284	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6965957	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs6968595	0.92[ASN][1000 genomes]
rs715937	0.99[ASN][1000 genomes]
rs73438500	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73440504	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73440522	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73440528	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73440532	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73440534	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73440551	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7783242	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7794583	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7797011	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7800299	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs792617	0.99[ASN][1000 genomes]
rs792620	0.91[ASN][1000 genomes]
rs792637	0.99[ASN][1000 genomes]
rs967297	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs9785002	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links