Variant report

Variant	rs994396
Chromosome Location	chr1:67012236-67012237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10889624	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10889625	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11208903	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12143964	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1338184	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1338194	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1338200	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1415974	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1415984	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1547737	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1856315	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1947083	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2121051	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859914	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4142763	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4655494	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6588203	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6588204	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6691033	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7354930	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7354983	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7355221	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7540195	0.80[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7543607	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs967322	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs967325	0.95[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs984409	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
4	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
5	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
6	chr1:67004800-67012400	Enhancers	Brain Substantia Nigra	brain
7	chr1:67007000-67021800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:67007200-67018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:67007800-67012400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:67008000-67012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:67008400-67018000	Weak transcription	Lung	lung
12	chr1:67008600-67012600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:67008600-67013000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:67009000-67019600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:67009400-67013800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:67009600-67018200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:67009600-67019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:67009800-67028200	Weak transcription	Brain Germinal Matrix	brain
19	chr1:67010000-67013400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr1:67010000-67018600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr1:67010000-67018600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr1:67010000-67029000	Weak transcription	Fetal Kidney	kidney
23	chr1:67010800-67012400	Enhancers	Fetal Lung	lung
24	chr1:67010800-67018600	Weak transcription	Osteobl	bone
25	chr1:67011000-67013200	Enhancers	NHLF	lung
26	chr1:67011000-67028000	Weak transcription	HUVEC	blood vessel
27	chr1:67011200-67013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:67011200-67013200	Weak transcription	Brain Anterior Caudate	brain
29	chr1:67011200-67013200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:67011200-67021800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:67011200-67022000	Weak transcription	Pancreas	Pancrea
32	chr1:67011400-67013200	Weak transcription	Aorta	Aorta
33	chr1:67011400-67017800	Weak transcription	Left Ventricle	heart
34	chr1:67011600-67017600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:67011800-67029800	Weak transcription	Fetal Brain Male	brain
36	chr1:67012000-67013200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:67012000-67013200	Weak transcription	Right Atrium	heart
38	chr1:67012200-67012400	Enhancers	Stomach Smooth Muscle	stomach
39	chr1:67012200-67013200	Weak transcription	Brain Angular Gyrus	brain
40	chr1:67012200-67017800	Weak transcription	NHDF-Ad	bronchial

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