Variant report

Variant	rs9943970
Chromosome Location	chr14:56302119-56302120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10139439	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10144952	0.81[EUR][1000 genomes]
rs11627644	0.90[EUR][1000 genomes]
rs12590558	0.88[EUR][1000 genomes]
rs12897306	0.88[EUR][1000 genomes]
rs1959092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2152289	0.87[EUR][1000 genomes]
rs2342840	0.83[AMR][1000 genomes]
rs4901614	0.88[EUR][1000 genomes]
rs6573065	0.84[EUR][1000 genomes]
rs7143461	0.98[EUR][1000 genomes]
rs7148208	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7149155	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7156779	0.88[EUR][1000 genomes]
rs868498	0.84[EUR][1000 genomes]
rs9944128	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56299600-56304000	Weak transcription	HepG2	liver
2	chr14:56300200-56303000	Weak transcription	Fetal Intestine Large	intestine
3	chr14:56301600-56302800	Weak transcription	Fetal Intestine Small	intestine
4	chr14:56301800-56302800	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links