Variant report

Variant	rs9954239
Chromosome Location	chr18:30348301-30348302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12232690	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1523576	0.87[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17738786	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17851892	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62092151	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7232060	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7234849	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7241727	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8084642	0.92[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8086995	0.81[AMR][1000 genomes]
rs9946321	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9954239	STK10	trans	cerebellum	SCAN
rs9954239	KLHL14	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30344200-30348800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:30345800-30349600	Weak transcription	Right Atrium	heart
3	chr18:30347200-30348800	Active TSS	HepG2	liver
4	chr18:30347200-30349200	Active TSS	Fetal Brain Female	brain
5	chr18:30347600-30349000	Active TSS	Fetal Kidney	kidney
6	chr18:30347800-30348400	Active TSS	Primary B cells from cord blood	blood
7	chr18:30348000-30348400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr18:30348000-30350000	Flanking Active TSS	Primary B cells from peripheral blood	blood
9	chr18:30348200-30348400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:30348200-30348400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr18:30348200-30348400	Enhancers	Fetal Brain Male	brain
12	chr18:30348200-30349000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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