Variant report

Variant	rs995661
Chromosome Location	chr7:104287827-104287828
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10241057	0.87[MEX][hapmap];0.81[TSI][hapmap]
rs10487221	1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[JPT][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap]
rs10487222	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs6943307	0.87[MEX][hapmap];0.81[TSI][hapmap]
rs7458699	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7781331	0.92[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs7782065	0.87[MEX][hapmap];0.81[TSI][hapmap]
rs7801387	0.92[CEU][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs995661	ATXN7L1	cis	parietal	SCAN
rs995661	POP7	cis	cerebellum	SCAN
rs995661	ATXN7L1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104285000-104290400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:104287800-104290400	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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