Variant report

Variant	rs9963068
Chromosome Location	chr18:30474367-30474368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30414875..30417586-chr18:30473319..30475920,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263765	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12104007	1.00[AMR][1000 genomes]
rs16963999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964005	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964017	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964035	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964036	1.00[AMR][1000 genomes]
rs16964062	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964082	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964115	1.00[AMR][1000 genomes]
rs16964116	1.00[AMR][1000 genomes]
rs16964117	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28458243	1.00[AMR][1000 genomes]
rs28496433	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28516912	0.81[AFR][1000 genomes]
rs28771668	1.00[AMR][1000 genomes]
rs55742357	1.00[AMR][1000 genomes]
rs56017479	1.00[AMR][1000 genomes]
rs60730880	0.81[AFR][1000 genomes]
rs60766333	0.85[AFR][1000 genomes]
rs61164044	1.00[AMR][1000 genomes]
rs9783891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9783904	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9944992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9945125	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9947074	1.00[AMR][1000 genomes]
rs9949048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9949112	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9949158	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9951977	1.00[AMR][1000 genomes]
rs9953097	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9956243	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9956679	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9958205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9965451	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv2250	chr18:30473758-30505927	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30469800-30475200	Weak transcription	Pancreas	Pancrea

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