Variant report

Variant	rs9966010
Chromosome Location	chr18:25298705-25298706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11083224	0.82[AMR][1000 genomes]
rs9954254	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25296800-25299000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:25296800-25299800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:25296800-25300000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:25296800-25300000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr18:25297000-25299000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:25297000-25299200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:25297000-25299200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr18:25297000-25299200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr18:25297400-25299600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr18:25297600-25298800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr18:25297600-25299600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:25297800-25300000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr18:25298200-25299000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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