Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10216158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10232001	0.80[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap]
rs10279350	0.83[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap]
rs10280247	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs10487458	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap]
rs10808227	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs10954134	0.81[CHB][hapmap]
rs10954135	0.81[CHB][hapmap]
rs11978951	0.80[CHB][hapmap]
rs1362001	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1579214	0.89[MEX][hapmap]
rs1946116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2237773	0.84[MEX][hapmap]
rs2283070	0.81[CHB][hapmap]
rs2299500	0.80[CHB][hapmap]
rs2299513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299514	1.00[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4728050	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs6467095	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs6467096	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs6467097	0.81[JPT][hapmap]
rs6974018	0.80[CHB][hapmap]
rs73228911	0.82[AFR][1000 genomes]
rs7801141	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9649507	0.81[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9969183	GRM8	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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