Variant report
| Variant | rs9970953 |
|---|---|
| Chromosome Location | chr1:210372694-210372695 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10489389 | 1.00[EUR][1000 genomes] |
| rs12088457 | 1.00[EUR][1000 genomes] |
| rs12088691 | 1.00[EUR][1000 genomes] |
| rs1342134 | 1.00[EUR][1000 genomes] |
| rs17015995 | 1.00[EUR][1000 genomes] |
| rs17015999 | 1.00[EUR][1000 genomes] |
| rs17016011 | 1.00[EUR][1000 genomes] |
| rs17276856 | 1.00[EUR][1000 genomes] |
| rs35415182 | 0.84[AFR][1000 genomes] |
| rs55684632 | 1.00[EUR][1000 genomes] |
| rs55934820 | 1.00[EUR][1000 genomes] |
| rs56017967 | 1.00[EUR][1000 genomes] |
| rs57296511 | 1.00[EUR][1000 genomes] |
| rs57841462 | 1.00[EUR][1000 genomes] |
| rs61384712 | 1.00[EUR][1000 genomes] |
| rs73061730 | 1.00[EUR][1000 genomes] |
| rs73061735 | 1.00[EUR][1000 genomes] |
| rs73061738 | 1.00[EUR][1000 genomes] |
| rs73071940 | 1.00[EUR][1000 genomes] |
| rs73071956 | 1.00[EUR][1000 genomes] |
| rs73071958 | 1.00[EUR][1000 genomes] |
| rs73071959 | 1.00[EUR][1000 genomes] |
| rs73071965 | 1.00[EUR][1000 genomes] |
| rs73074132 | 1.00[EUR][1000 genomes] |
| rs74156110 | 1.00[EUR][1000 genomes] |
| rs74156112 | 1.00[EUR][1000 genomes] |
| rs74156113 | 1.00[EUR][1000 genomes] |
| rs74156114 | 1.00[EUR][1000 genomes] |
| rs74156116 | 1.00[EUR][1000 genomes] |
| rs74156118 | 1.00[EUR][1000 genomes] |
| rs74156121 | 1.00[EUR][1000 genomes] |
| rs74156122 | 1.00[EUR][1000 genomes] |
| rs74156123 | 1.00[EUR][1000 genomes] |
| rs742689 | 0.82[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014034 | chr1:209759648-210501731 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:210369400-210375400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
