Variant report
| Variant | rs9971730 |
|---|---|
| Chromosome Location | chr12:63353853-63353854 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000139239 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1026096 | 1.00[ASN][1000 genomes] |
| rs10506470 | 1.00[ASN][1000 genomes] |
| rs1249935 | 1.00[ASN][1000 genomes] |
| rs12813083 | 1.00[ASN][1000 genomes] |
| rs12821413 | 1.00[ASN][1000 genomes] |
| rs12821849 | 1.00[ASN][1000 genomes] |
| rs12829134 | 1.00[ASN][1000 genomes] |
| rs17098568 | 1.00[ASN][1000 genomes] |
| rs17098575 | 1.00[ASN][1000 genomes] |
| rs17098581 | 1.00[ASN][1000 genomes] |
| rs17098689 | 1.00[ASN][1000 genomes] |
| rs17098761 | 1.00[ASN][1000 genomes] |
| rs17098763 | 1.00[ASN][1000 genomes] |
| rs17098774 | 1.00[ASN][1000 genomes] |
| rs17098779 | 1.00[ASN][1000 genomes] |
| rs17098789 | 1.00[ASN][1000 genomes] |
| rs17098794 | 1.00[ASN][1000 genomes] |
| rs1731661 | 1.00[ASN][1000 genomes] |
| rs17739095 | 1.00[ASN][1000 genomes] |
| rs2464118 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2840070 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2884542 | 1.00[ASN][1000 genomes] |
| rs34203667 | 1.00[ASN][1000 genomes] |
| rs35910451 | 1.00[ASN][1000 genomes] |
| rs67784802 | 1.00[ASN][1000 genomes] |
| rs67994077 | 1.00[ASN][1000 genomes] |
| rs699591 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs699593 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs699615 | 1.00[ASN][1000 genomes] |
| rs71450600 | 1.00[ASN][1000 genomes] |
| rs71465172 | 1.00[ASN][1000 genomes] |
| rs71465180 | 1.00[ASN][1000 genomes] |
| rs71465181 | 1.00[ASN][1000 genomes] |
| rs771974 | 1.00[ASN][1000 genomes] |
| rs771976 | 1.00[ASN][1000 genomes] |
| rs772538 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs772541 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3415227 | chr12:63228121-63591615 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:63353000-63357400 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr12:63353400-63357000 | Weak transcription | HepG2 | liver |
| 3 | chr12:63353600-63354600 | Weak transcription | Stomach Mucosa | stomach |
