Variant report

Variant	rs9986520
Chromosome Location	chr6:151023800-151023801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1466725	0.84[AFR][1000 genomes]
rs1968999	0.85[EUR][1000 genomes]
rs2279628	0.83[EUR][1000 genomes]
rs4869932	0.85[EUR][1000 genomes]
rs4869934	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869935	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869936	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869938	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869939	1.00[EUR][1000 genomes]
rs5029652	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902743	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748886	0.85[EUR][1000 genomes]
rs7772795	0.88[EUR][1000 genomes]
rs9478785	0.84[AFR][1000 genomes]
rs9478786	1.00[EUR][1000 genomes]
rs9478790	0.85[EUR][1000 genomes]
rs9480534	0.85[EUR][1000 genomes]
rs9480535	0.85[EUR][1000 genomes]
rs9480536	0.85[EUR][1000 genomes]
rs9480537	0.82[AFR][1000 genomes]
rs9480538	0.84[AFR][1000 genomes]
rs9480540	1.00[EUR][1000 genomes]
rs9480543	0.94[AFR][1000 genomes]
rs9480545	0.94[AFR][1000 genomes]
rs9480548	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480549	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480551	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986516	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv966635	chr6:151018787-151025050	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151012200-151023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
3	chr6:151015400-151025600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:151017600-151023800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:151017600-151029200	Weak transcription	Lung	lung
6	chr6:151017800-151025200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:151017800-151025600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:151017800-151027200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:151018800-151023800	Weak transcription	Fetal Thymus	thymus
10	chr6:151018800-151024000	Weak transcription	Placenta	Placenta
11	chr6:151018800-151028600	Weak transcription	Adipose Nuclei	Adipose
12	chr6:151019000-151033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:151019000-151033200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:151019000-151035200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:151020800-151025600	Weak transcription	Esophagus	oesophagus
16	chr6:151021400-151024000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:151021400-151025400	Enhancers	Primary B cells from cord blood	blood
18	chr6:151021400-151026400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:151021400-151029000	Weak transcription	Left Ventricle	heart
20	chr6:151021600-151025600	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:151021600-151026800	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:151021600-151033000	Weak transcription	Fetal Stomach	stomach
23	chr6:151021600-151040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:151022000-151025200	Weak transcription	Spleen	Spleen
25	chr6:151023400-151025400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:151023600-151024000	Enhancers	Thymus	Thymus
27	chr6:151023600-151024400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:151023600-151024400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:151023600-151025400	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:151023800-151024200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:151023800-151024200	Enhancers	HMEC	breast
32	chr6:151023800-151024400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:151023800-151024400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr6:151023800-151025200	Enhancers	Fetal Thymus	thymus

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