Variant report

Variant	rs9987341
Chromosome Location	chr8:42688195-42688196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:42685435..42688953-chr8:42689231..42695334,5	K562	blood:
2	chr8:42687826..42689340-chr8:42696300..42698084,2	K562	blood:
3	chr8:42688180..42692034-chr8:42697379..42699248,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131931	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10088342	1.00[AFR][1000 genomes]
rs28451150	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv428516	chr8:42577171-42731235	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42670000-42697400	Weak transcription	Right Ventricle	heart
2	chr8:42678400-42696600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:42679600-42697400	Weak transcription	Aorta	Aorta
4	chr8:42681000-42693200	Weak transcription	HepG2	liver
5	chr8:42684200-42696800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:42686000-42693200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:42686800-42688400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:42686800-42692800	Weak transcription	Left Ventricle	heart
9	chr8:42686800-42694200	Weak transcription	Primary T cells from cord blood	blood
10	chr8:42686800-42696800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:42687000-42690200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:42687000-42690400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:42687000-42690400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr8:42687000-42691600	Weak transcription	Adipose Nuclei	Adipose
15	chr8:42687000-42691800	Weak transcription	HSMM	muscle
16	chr8:42687000-42692000	Weak transcription	A549	lung
17	chr8:42687000-42693000	Weak transcription	Thymus	Thymus
18	chr8:42687000-42694800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:42687000-42696600	Weak transcription	Brain Hippocampus Middle	brain
20	chr8:42687200-42690000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:42687200-42690600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:42687200-42692000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr8:42687200-42692000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr8:42687200-42693200	Weak transcription	Ovary	ovary
25	chr8:42687200-42695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr8:42687200-42695200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr8:42687200-42696400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:42687200-42696600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr8:42687400-42690000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr8:42687400-42690200	Weak transcription	Fetal Intestine Small	intestine
31	chr8:42687400-42691600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:42687600-42696400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr8:42687800-42690400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr8:42688000-42692000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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