Variant report

Variant	rs9994601
Chromosome Location	chr4:56911950-56911951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56815530..56818223-chr4:56910044..56912161,2	K562	blood:
2	chr4:56907216..56909434-chr4:56911835..56913901,2	K562	blood:
3	chr4:56910116..56913071-chr4:56914589..56916091,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1072799	1.00[ASN][1000 genomes]
rs11727702	1.00[ASN][1000 genomes]
rs11729456	1.00[ASN][1000 genomes]
rs11734942	1.00[ASN][1000 genomes]
rs17086132	1.00[ASN][1000 genomes]
rs17086150	1.00[ASN][1000 genomes]
rs17086186	1.00[ASN][1000 genomes]
rs17086254	1.00[ASN][1000 genomes]
rs17728804	1.00[ASN][1000 genomes]
rs17740755	1.00[ASN][1000 genomes]
rs17742000	1.00[ASN][1000 genomes]
rs17742722	1.00[ASN][1000 genomes]
rs17743071	1.00[ASN][1000 genomes]
rs17797113	1.00[ASN][1000 genomes]
rs17797407	1.00[ASN][1000 genomes]
rs17797571	1.00[ASN][1000 genomes]
rs17797595	1.00[ASN][1000 genomes]
rs17798452	1.00[ASN][1000 genomes]
rs17798872	1.00[ASN][1000 genomes]
rs2899046	1.00[ASN][1000 genomes]
rs2899053	1.00[ASN][1000 genomes]
rs34179097	1.00[ASN][1000 genomes]
rs34184679	1.00[ASN][1000 genomes]
rs34650834	1.00[ASN][1000 genomes]
rs35143702	1.00[ASN][1000 genomes]
rs41279543	1.00[ASN][1000 genomes]
rs41280345	1.00[ASN][1000 genomes]
rs56026480	1.00[ASN][1000 genomes]
rs61753870	1.00[ASN][1000 genomes]
rs6814812	1.00[ASN][1000 genomes]
rs6817717	1.00[ASN][1000 genomes]
rs6833480	1.00[ASN][1000 genomes]
rs6845953	1.00[ASN][1000 genomes]
rs6848009	1.00[ASN][1000 genomes]
rs73238359	1.00[ASN][1000 genomes]
rs73238365	1.00[ASN][1000 genomes]
rs73238367	1.00[ASN][1000 genomes]
rs73238368	1.00[ASN][1000 genomes]
rs73238369	1.00[ASN][1000 genomes]
rs73238370	1.00[ASN][1000 genomes]
rs73238371	1.00[ASN][1000 genomes]
rs73238372	1.00[ASN][1000 genomes]
rs73238373	1.00[ASN][1000 genomes]
rs73238377	1.00[ASN][1000 genomes]
rs73238379	1.00[ASN][1000 genomes]
rs73238380	1.00[ASN][1000 genomes]
rs73238381	1.00[ASN][1000 genomes]
rs73238382	1.00[ASN][1000 genomes]
rs73238383	1.00[ASN][1000 genomes]
rs73238384	1.00[ASN][1000 genomes]
rs73238387	1.00[ASN][1000 genomes]
rs73238390	1.00[ASN][1000 genomes]
rs73238395	1.00[ASN][1000 genomes]
rs73238397	1.00[ASN][1000 genomes]
rs73238398	1.00[ASN][1000 genomes]
rs73238399	1.00[ASN][1000 genomes]
rs73238400	1.00[ASN][1000 genomes]
rs748013	1.00[ASN][1000 genomes]
rs7657912	1.00[ASN][1000 genomes]
rs7669903	1.00[ASN][1000 genomes]
rs7675287	1.00[ASN][1000 genomes]
rs7690739	1.00[ASN][1000 genomes]
rs7698100	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56907800-56914000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:56908400-56914600	Weak transcription	GM12878-XiMat	blood
3	chr4:56909600-56914600	Weak transcription	Primary B cells from peripheral blood	blood

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