Variant report

Variant	esv1001126
Chromosome Location	chr7:63819436-63844309
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:63810767..63813446-chr7:63828000..63830208,2	K562	blood:
2	chr7:63808452..63810015-chr7:63818537..63821192,2	K562	blood:
3	chr7:63818124..63820265-chr7:63820737..63823349,2	MCF-7	breast:
4	chr7:63818124..63820265-chr7:63820737..63823349,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
2	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
3	lnc-ZNF736-1	chr7:63832148-63832189	XLOC_006123
4	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
5	lnc-ZNF736-2	chr7:63834825-63834944	XLOC_006124
6	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
7	lnc-ZNF736-1	chr7:63831907-63831978	XLOC_006123

No data

Variant related genes	Relation type
CDV3	miRNA target sites
CDX2	miRNA target sites
RAB5C	miRNA target sites

Extended variants
information (count: 487 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:487 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564375563	chr7:63819444-63819445	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs561329555	chr7:63819471-63819472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs532983045	chr7:63819474-63819475	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs543170911	chr7:63819567-63819568	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs563135845	chr7:63819589-63819590	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs529396558	chr7:63819653-63819654	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs549304740	chr7:63819664-63819665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs182073639	chr7:63819711-63819712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs150463080	chr7:63819745-63819746	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs565976868	chr7:63819799-63819800	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs528453604	chr7:63819802-63819803	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs530739560	chr7:63819815-63819816	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs551810076	chr7:63819832-63819833	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs662978	chr7:63819849-63819850	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs186617696	chr7:63819859-63819860	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs191469980	chr7:63819870-63819871	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs570644698	chr7:63819893-63819894	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs557634271	chr7:63819897-63819898	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs76055152	chr7:63819980-63819981	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs535576669	chr7:63819983-63819984	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs555405763	chr7:63820094-63820095	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs571966679	chr7:63820138-63820139	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs540973971	chr7:63820151-63820152	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs138324790	chr7:63820166-63820167	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs149228535	chr7:63820182-63820183	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs73368048	chr7:63820226-63820227	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs73135650	chr7:63820241-63820242	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs529040308	chr7:63820286-63820287	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs542731333	chr7:63820294-63820295	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs559771307	chr7:63820339-63820340	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs533645340	chr7:63820340-63820341	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs181419353	chr7:63820470-63820471	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs371028155	chr7:63820482-63820483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs79734213	chr7:63820495-63820496	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs201402321	chr7:63820496-63820497	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs563634912	chr7:63820497-63820498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs56124550	chr7:63820499-63820500	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs565126937	chr7:63820540-63820541	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs146906938	chr7:63820687-63820688	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs185658236	chr7:63820715-63820716	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs535945237	chr7:63820725-63820726	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs567873735	chr7:63820737-63820738	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs639340	chr7:63820909-63820910	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs548806203	chr7:63820910-63820911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs565725884	chr7:63820964-63820965	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs551771264	chr7:63821044-63821045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs569246142	chr7:63821081-63821082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs534408286	chr7:63821136-63821137	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs6460142	chr7:63821145-63821146	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs577197986	chr7:63821146-63821147	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Hepatocellular carcinoma	22267523	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63790200-63820200	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr7:63790200-63826600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:63817600-63819600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr7:63819200-63820400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
5	chr7:63820600-63821000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr7:63822600-63825000	ZNF genes & repeats	Liver	Liver
7	chr7:63823000-63824000	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr7:63828600-63834600	Weak transcription	Fetal Heart	heart
9	chr7:63830000-63830200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links