Variant report

Variant	esv1005491
Chromosome Location	chr1:113611111-113613777
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr1:113613261-113613789	K562	blood:	n/a	n/a
2	NR2F2	chr1:113613318-113613761	K562	blood:	n/a	n/a
3	POLR2A	chr1:113612233-113612410	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:113610863..113612583-chr1:113613310..113615320,3	K562	blood:
2	chr1:113613175..113615596-chr1:113621813..113624852,3	K562	blood:
3	chr1:113608530..113612583-chr1:113612814..113618341,10	K562	blood:
4	chr1:113495059..113500488-chr1:113613593..113618010,11	K562	blood:
5	chr1:113608350..113611727-chr1:113613792..113617308,4	MCF-7	breast:
6	chr1:113610863..113612583-chr1:113613310..113615320,3	K562	blood:

No data

Variant related genes	Relation type
LRIG2	TF binding region
ENSG00000198799	chromatin interactions
ENSG00000155380	chromatin interactions
ENSG00000238198	chromatin interactions
ENSG00000226419	chromatin interactions

Extended variants
information (count: 31 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529119339	chr1:113611117-113611118	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs55737720	chr1:113611126-113611127	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs370484904	chr1:113611150-113611151	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs567319209	chr1:113611209-113611210	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs115522588	chr1:113611293-113611294	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs546899067	chr1:113611318-113611319	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs566810097	chr1:113611328-113611329	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs200007576	chr1:113611338-113611339	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs201697192	chr1:113611340-113611341	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs200088114	chr1:113611341-113611342	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs538939604	chr1:113611342-113611343	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs558230434	chr1:113611344-113611345	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs568852779	chr1:113611345-113611346	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs537518284	chr1:113611371-113611372	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs554679081	chr1:113611453-113611454	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs573881678	chr1:113611674-113611675	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs200826268	chr1:113611687-113611688	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs28494698	chr1:113611759-113611760	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs9662686	chr1:113611873-113611874	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs376069652	chr1:113611932-113611933	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs28613088	chr1:113612161-113612162	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs111847526	chr1:113612222-113612223	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs374522756	chr1:113612232-113612233	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs28690899	chr1:113612380-113612381	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs28606526	chr1:113612389-113612390	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs28430817	chr1:113612453-113612454	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs368426090	chr1:113612486-113612487	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs557762859	chr1:113612487-113612488	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs542854198	chr1:113613675-113613676	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs553249759	chr1:113613755-113613756	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs370010307	chr1:113613763-113613764	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Medulloblastoma	21979893	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21720365	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Pancreatic endocrine tumor	17639061	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	17550852	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Asthma	20841430	CNVD
Aetanephric adenomas	20802469	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Systemic lupus erythematosus	21956041	CNVD
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	16573809	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Breast cancer	17899364	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Melanoma	19671679	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:113600400-113614400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:113600400-113614800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:113600400-113615000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:113602400-113615000	Weak transcription	Right Atrium	heart
5	chr1:113602600-113614800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:113610600-113611200	Enhancers	Fetal Intestine Large	intestine
7	chr1:113610600-113611200	Enhancers	Fetal Intestine Small	intestine
8	chr1:113610600-113611200	Enhancers	HepG2	liver
9	chr1:113610800-113611200	Enhancers	A549	lung
10	chr1:113611200-113614200	Weak transcription	Fetal Intestine Small	intestine
11	chr1:113611200-113614400	Weak transcription	Fetal Intestine Large	intestine
12	chr1:113611200-113614400	Weak transcription	HepG2	liver
13	chr1:113611200-113614800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links