Variant report

Variant	esv10091
Chromosome Location	chr8:47766892-47769782
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-1134I14.8.1-3	chr8:47766386-47767407	NONHSAT126421

Extended variants
information (count: 39 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545438506	chr8:47766984-47766985	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs182598892	chr8:47766990-47766991	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs559802333	chr8:47767027-47767028	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs187157566	chr8:47767028-47767029	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs545757083	chr8:47767029-47767030	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs571583199	chr8:47767031-47767032	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs150661010	chr8:47767035-47767036	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs117494780	chr8:47767040-47767041	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs566029870	chr8:47767042-47767043	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs533345855	chr8:47767058-47767059	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs531592976	chr8:47767082-47767083	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs551836832	chr8:47767083-47767084	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs375814192	chr8:47767100-47767101	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs548494183	chr8:47767130-47767131	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs369763358	chr8:47767160-47767161	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs561891911	chr8:47767207-47767208	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs139914176	chr8:47767212-47767213	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs555697009	chr8:47767229-47767230	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs190380647	chr8:47767254-47767255	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs149841909	chr8:47767291-47767292	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs373512028	chr8:47767321-47767322	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs553247863	chr8:47767360-47767361	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs577945325	chr8:47767365-47767366	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs527466903	chr8:47767367-47767368	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs539029813	chr8:47767399-47767400	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs557295396	chr8:47767435-47767436	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs575968375	chr8:47767458-47767459	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs543455659	chr8:47767541-47767542	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs147537793	chr8:47767556-47767557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs573780199	chr8:47767562-47767563	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs118127314	chr8:47767643-47767644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs10092655	chr8:47767695-47767696	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs4872654	chr8:47767705-47767706	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs572190451	chr8:47767717-47767718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs181653496	chr8:47767753-47767754	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs563655307	chr8:47767758-47767759	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs530820155	chr8:47767762-47767763	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs549448105	chr8:47767787-47767788	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs567701315	chr8:47767793-47767794	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Lung cancer	18438408	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Medulloblastoma	20607354	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	20409316	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Tetralogy of Fallot	22912587	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:47763400-47767400	Weak transcription	Placenta	Placenta
2	chr8:47767400-47767800	Enhancers	Placenta	Placenta

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