The 2.0 version of rSNPBase

Variant report

Variant esv1059421
Chromosome Location chr6:5315970-5315974
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5288000-5316200 Weak transcription Fetal Stomach stomach
2 chr6:5288400-5324000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:5288400-5331000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr6:5292800-5334400 Weak transcription Rectal Smooth Muscle rectum
5 chr6:5295400-5325000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr6:5296200-5316000 Weak transcription Lung lung
7 chr6:5301800-5322200 Weak transcription Ovary ovary
8 chr6:5302600-5316000 Weak transcription Brain Inferior Temporal Lobe brain
9 chr6:5302800-5319200 Weak transcription Aorta Aorta
10 chr6:5303200-5316000 Weak transcription Brain Hippocampus Middle brain
11 chr6:5303200-5368800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr6:5303600-5316000 Weak transcription Brain Anterior Caudate brain
13 chr6:5303600-5317400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr6:5303600-5319000 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr6:5303600-5332400 Weak transcription Gastric stomach
16 chr6:5303800-5316000 Weak transcription Stomach Smooth Muscle stomach
17 chr6:5303800-5316200 Weak transcription Left Ventricle heart
18 chr6:5304000-5320400 Weak transcription Primary T regulatory cells fromperipheralblood blood
19 chr6:5304000-5325400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr6:5304000-5326000 Weak transcription Primary T cells fromperipheralblood blood
21 chr6:5304000-5337600 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr6:5304200-5316000 Weak transcription Fetal Muscle Leg muscle
23 chr6:5304200-5322800 Weak transcription Pancreas Pancrea
24 chr6:5306800-5316000 Weak transcription Fetal Lung lung
25 chr6:5306800-5321400 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr6:5307000-5320400 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr6:5307000-5323800 Weak transcription HepG2 liver
28 chr6:5307800-5318800 Weak transcription Fetal Intestine Large intestine
29 chr6:5308800-5318000 Weak transcription Primary B cells from cord blood blood
30 chr6:5308800-5325000 Weak transcription Primary T cells from cord blood blood
31 chr6:5308800-5325000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr6:5309000-5317200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr6:5309200-5333400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr6:5309200-5334000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr6:5312800-5317400 Enhancers iPS-15b Cell Line embryonic stem cell
36 chr6:5313000-5316400 Enhancers H1 Cell Line embryonic stem cell
37 chr6:5313800-5322800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr6:5314400-5316000 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr6:5314400-5316000 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr6:5314600-5316000 Weak transcription ES-WA7 Cell Line embryonic stem cell
41 chr6:5314800-5316000 Weak transcription Psoas Muscle Psoas
42 chr6:5314800-5323800 Weak transcription GM12878-XiMat blood
43 chr6:5315000-5326400 Weak transcription Primary B cells from peripheral blood blood
44 chr6:5315400-5316000 Enhancers Skeletal Muscle Female skeletal muscle
45 chr6:5315400-5316400 Enhancers HUES48 Cell Line embryonic stem cell
46 chr6:5315400-5316400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
47 chr6:5315400-5316800 Enhancers Cortex derived primary cultured neurospheres brain
48 chr6:5315400-5316800 Enhancers Pancreatic Islets Pancreatic Islet
49 chr6:5315600-5316000 Enhancers Skeletal Muscle Male skeletal muscle
50 chr6:5315600-5317400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015