Variant report

Variant	esv1062576
Chromosome Location	chr15:77663875-77663881
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs71145817	chr15:77663876-77663877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs202025217	chr15:77663879-77663880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs544029570	chr15:77663881-77663882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77637200-77666800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:77639600-77664400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:77639800-77687000	Weak transcription	Primary B cells from cord blood	blood
4	chr15:77642600-77664000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:77642600-77664800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:77645800-77664200	Weak transcription	Brain Anterior Caudate	brain
7	chr15:77645800-77665800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:77645800-77665800	Weak transcription	Pancreas	Pancrea
9	chr15:77645800-77674000	Weak transcription	Ovary	ovary
10	chr15:77645800-77677000	Weak transcription	Right Ventricle	heart
11	chr15:77646800-77666000	Weak transcription	Stomach Mucosa	stomach
12	chr15:77647000-77687200	Weak transcription	A549	lung
13	chr15:77648600-77685800	Weak transcription	Gastric	stomach
14	chr15:77651600-77664000	Weak transcription	Fetal Heart	heart
15	chr15:77651600-77674000	Weak transcription	Psoas Muscle	Psoas
16	chr15:77654400-77664400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr15:77655200-77664400	Weak transcription	Fetal Brain Male	brain
18	chr15:77656000-77666000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:77656000-77674000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:77656200-77676600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:77656400-77664200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:77656400-77665200	Weak transcription	Left Ventricle	heart
23	chr15:77656400-77683200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:77656600-77664600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:77656600-77665600	Weak transcription	Fetal Stomach	stomach
26	chr15:77660400-77671000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:77661200-77664800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:77662000-77667400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:77662200-77677000	Weak transcription	NHDF-Ad	bronchial
30	chr15:77663000-77680200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links