Variant report
| Variant | esv10838 |
|---|---|
| Chromosome Location | chr11:107126718-107127564 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs563014821 | chr11:107126761-107126762 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs10789586 | chr11:107126767-107126768 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs545059398 | chr11:107126775-107126776 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs560500243 | chr11:107126792-107126793 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs10789587 | chr11:107126793-107126794 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 6 | rs371634260 | chr11:107126824-107126825 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs370260344 | chr11:107126844-107126845 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs549457661 | chr11:107126859-107126860 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs561370821 | chr11:107126887-107126888 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs4644621 | chr11:107126920-107126921 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 11 | rs112411390 | chr11:107127089-107127090 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs569038405 | chr11:107127091-107127092 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs376361083 | chr11:107127111-107127112 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs142880723 | chr11:107127116-107127117 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs10749888 | chr11:107127162-107127163 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 16 | rs57284863 | chr11:107127175-107127176 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs545759004 | chr11:107127238-107127239 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs549602417 | chr11:107127239-107127240 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs571468171 | chr11:107127246-107127247 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs555000545 | chr11:107127281-107127282 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs7122583 | chr11:107127296-107127297 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 22 | rs188417122 | chr11:107127372-107127373 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs547300999 | chr11:107127397-107127398 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs571163761 | chr11:107127399-107127400 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs191690814 | chr11:107127446-107127447 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs372741262 | chr11:107127450-107127451 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs118071556 | chr11:107127483-107127484 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs376454335 | chr11:107127518-107127519 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs368053673 | chr11:107127525-107127526 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs4753795 | chr11:107127529-107127530 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:90)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Cancer | 21637783 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Chronic lymphocytic leukemia | 21795749 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Neuroblastoma | 21484798 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 20837533 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Neuroblastoma | 18923524 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Cancer | 16751803 | CNVD |
| Seminomas | 18059402 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 22429812 | CNVD |
| Breast cancer | 16608533 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Melanoma | 18172304 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Hepatocellular carcinoma | 16785998 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Breast cancer | 21958427 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Breast cancer | 17133270 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Breast cancer | 17603634 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Basal cell lymphoma | 16790693 | CNVD |
| Chronic lymphocytic leukemia | 21670202 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Ovarian clear cell carcinoma | 19293255 | CNVD |
| Mental retardation | 19966786 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Follicular lymphoma | 17170743 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Chronic lymphocytic leukemia | 17805327 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Chronic lymphocytic leukemia | 18922857 | CNVD |
| Neuroblastoma | 17327916 | CNVD |
| Esophageal adenocarcinoma | 18519675 | CNVD |
| Esophageal squamous carcinoma | 17470683 | CNVD |
| Mantle cell lymphoma | 19029149 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Malignant melanoma | 17260012 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Obesity | 19966786 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Cancer | 20164920 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:107126200-107139600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
